CAZyme3D

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Entry ID

Information for CAZyme ID: QQS98423.1

Basic Information

GenBank IDQQS98423.1
FamilyGH23
Sequence Length400
UniProt IDA0A974NIM7(100,100)Download
Average pLDDT?79.46
CAZy50 ID98607
CAZy50 RepYes, QQS98423.1
Structure ClusterSC_GH23_clus502
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1407
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusPeribacillus
SpeciesPeribacillus psychrosaccharolyticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSPINDPNDH  ETDGSSALKS  AAGAAGKAAT  KRIGKKVINA  AATKATAAVG  STIGLPVILG60
IVAAVLILLA  GLIMIAFVVL  SSVGADQEGA  IGEGYYGGEI  SKFGSDEIPA  QFIPIYQAAQ120
EKYGVPWNLL  AAHHRVETVF  STLPTMKSPV  GAIGHFQFMP  LTWIGWRYPG  GDRLGNAGIP180
DKILTDPAMI  QKYGGYGVDA  NGDGKADPWD  VEDAIFSAAN  YLAANGAAEG  RIREAVFTYN240
HADWYVEEVL  GFADQYVKGY  IAINTGGEGS  TGNAVVDVGK  RWIGNSVYVF  GGGRNQSDIA300
RGRFDCSSFV  HWAFKQAGVD  LGPVTSTSTD  TLKYLGKPVS  QSELKPGDLV  FFNTYKRDGH360
VGIYIGNGQF  IGAQTRTGVG  IADMTTGYWK  EKFNGRGIRI  400

Predicted 3D structure by AlphaFold2 with pLDDT = 79.46 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSPINDPNDH  ETDGSSALKS  AAGAAGKAAT  KRIGKKVINA  AATKATAAVG  STIGLPVILG60
IVAAVLILLA  GLIMIAFVVL  SSVGADQEGA  IGEGYYGGEI  SKFGSDEIPA  QFIPIYQAAQ120
EKYGVPWNLL  AAHHRVETVF  STLPTMKSPV  GAIGHFQFMP  LTWIGWRYPG  GDRLGNAGIP180
DKILTDPAMI  QKYGGYGVDA  NGDGKADPWD  VEDAIFSAAN  YLAANGAAEG  RIREAVFTYN240
HADWYVEEVL  GFADQYVKGY  IAINTGGEGS  TGNAVVDVGK  RWIGNSVYVF  GGGRNQSDIA300
RGRFDCSSFV  HWAFKQAGVD  LGPVTSTSTD  TLKYLGKPVS  QSELKPGDLV  FFNTYKRDGH360
VGIYIGNGQF  IGAQTRTGVG  IADMTTGYWK  EKFNGRGIRI  400

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(122-260)

MSPINDPNDH  ETDGSSALKS  AAGAAGKAAT  KRIGKKVINA  AATKATAAVG  STIGLPVILG60
IVAAVLILLA  GLIMIAFVVL  SSVGADQEGA  IGEGYYGGEI  SKFGSDEIPA  QFIPIYQAAQ120
EKYGVPWNLL  AAHHRVETVF  STLPTMKSPV  GAIGHFQFMP  LTWIGWRYPG  GDRLGNAGIP180
DKILTDPAMI  QKYGGYGVDA  NGDGKADPWD  VEDAIFSAAN  YLAANGAAEG  RIREAVFTYN240
HADWYVEEVL  GFADQYVKGY  IAINTGGEGS  TGNAVVDVGK  RWIGNSVYVF  GGGRNQSDIA300
RGRFDCSSFV  HWAFKQAGVD  LGPVTSTSTD  TLKYLGKPVS  QSELKPGDLV  FFNTYKRDGH360
VGIYIGNGQF  IGAQTRTGVG  IADMTTGYWK  EKFNGRGIRI  400

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help