CAZyme3D

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Entry ID

Information for CAZyme ID: QQP91151.1

Basic Information

GenBank IDQQP91151.1
FamilyGH23
Sequence Length337
UniProt IDQQP91151.1(MOD)Download
Average pLDDT?76.07
CAZy50 ID138426
CAZy50 RepYes, QQP91151.1
Structure ClusterSC_GH23_clus337
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2775420
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyAzospirillaceae
GenusSkermanella
SpeciesSkermanella sp. TT6

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVVGIAIGIA  AALLSGCSSS  PSERTGPAAQ  GGYAGGLAGD  PWASHIAEAS  QRFDVPEPWI60
RAVMKVESGG  RTHMNGRPIV  SRAGAMGLMQ  VMPSTYEELR  VKHGLGSDPF  EPRDNILAGT120
AYLREMYEKF  GSPGFLAAYN  AGPGRYGEYL  TGDRGLPSET  RNYVAMISPQ  IDGIHPSRRV180
TDTLYAAATP  PAIQSRTIPS  RTVVAAAAAP  PRARPVVTAS  AAPVPIAPVQ  IAPVPITPVP240
AAPIQQVAMV  PANGPAGDWG  IQVGAFRSPT  ESNKAVEDAR  RAVPDLLTPA  RVYVMEVNTP300
AGRLYRARLL  GVTSASADRA  CARLTSQGSA  CMTVSPS337

Predicted 3D structure by AlphaFold2 with pLDDT = 76.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVVGIAIGIA  AALLSGCSSS  PSERTGPAAQ  GGYAGGLAGD  PWASHIAEAS  QRFDVPEPWI60
RAVMKVESGG  RTHMNGRPIV  SRAGAMGLMQ  VMPSTYEELR  VKHGLGSDPF  EPRDNILAGT120
AYLREMYEKF  GSPGFLAAYN  AGPGRYGEYL  TGDRGLPSET  RNYVAMISPQ  IDGIHPSRRV180
TDTLYAAATP  PAIQSRTIPS  RTVVAAAAAP  PRARPVVTAS  AAPVPIAPVQ  IAPVPITPVP240
AAPIQQVAMV  PANGPAGDWG  IQVGAFRSPT  ESNKAVEDAR  RAVPDLLTPA  RVYVMEVNTP300
AGRLYRARLL  GVTSASADRA  CARLTSQGSA  CMTVSPS337

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(56-167)

MVVGIAIGIA  AALLSGCSSS  PSERTGPAAQ  GGYAGGLAGD  PWASHIAEAS  QRFDVPEPWI60
RAVMKVESGG  RTHMNGRPIV  SRAGAMGLMQ  VMPSTYEELR  VKHGLGSDPF  EPRDNILAGT120
AYLREMYEKF  GSPGFLAAYN  AGPGRYGEYL  TGDRGLPSET  RNYVAMISPQ  IDGIHPSRRV180
TDTLYAAATP  PAIQSRTIPS  RTVVAAAAAP  PRARPVVTAS  AAPVPIAPVQ  IAPVPITPVP240
AAPIQQVAMV  PANGPAGDWG  IQVGAFRSPT  ESNKAVEDAR  RAVPDLLTPA  RVYVMEVNTP300
AGRLYRARLL  GVTSASADRA  CARLTSQGSA  CMTVSPS337

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help