CAZyme3D

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Entry ID

Information for CAZyme ID: QQK45109.1

Basic Information

GenBank IDQQK45109.1
FamilyCE12
Sequence Length266
UniProt IDA0A7T7BMD5(100,100)Download
Average pLDDT?91.69
CAZy50 ID167358
CAZy50 RepYes, QQK45109.1
Structure ClusterSC_CE12_clus25
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID36651
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderEurotiales
FamilyAspergillaceae
GenusPenicillium
SpeciesPenicillium digitatum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMSTILKATG  VALLSILSYV  QADPSGAFKR  SQKTPFFVLV  GDSTTATQSS  NGGGWGDGFL60
NTTLWKGASG  RNFGHNGATT  VSFRERGDWD  EVLATVRQVR  DDYHPFVTIQ  FGHNDQKPAA120
NISLAQYTSN  LERFVTEASD  AGATPILVTP  LSRRNYHNST  GTPRIVMSLA  NETISTIIAA180
HRSHAAYIDL  NKASTQYLNA  IGPENAFTYN  LKPTDYTHLN  LPGSTLFGGI  VGELIIRKFD240
HLERLGYLRV  DDKLKKDIDR  GIYYWP266

Predicted 3D structure by AlphaFold2 with pLDDT = 91.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MMSTILKATG  VALLSILSYV  QADPSGAFKR  SQKTPFFVLV  GDSTTATQSS  NGGGWGDGFL60
NTTLWKGASG  RNFGHNGATT  VSFRERGDWD  EVLATVRQVR  DDYHPFVTIQ  FGHNDQKPAA120
NISLAQYTSN  LERFVTEASD  AGATPILVTP  LSRRNYHNST  GTPRIVMSLA  NETISTIIAA180
HRSHAAYIDL  NKASTQYLNA  IGPENAFTYN  LKPTDYTHLN  LPGSTLFGGI  VGELIIRKFD240
HLERLGYLRV  DDKLKKDIDR  GIYYWP266

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE12(38-233)

MMSTILKATG  VALLSILSYV  QADPSGAFKR  SQKTPFFVLV  GDSTTATQSS  NGGGWGDGFL60
NTTLWKGASG  RNFGHNGATT  VSFRERGDWD  EVLATVRQVR  DDYHPFVTIQ  FGHNDQKPAA120
NISLAQYTSN  LERFVTEASD  AGATPILVTP  LSRRNYHNST  GTPRIVMSLA  NETISTIIAA180
HRSHAAYIDL  NKASTQYLNA  IGPENAFTYN  LKPTDYTHLN  LPGSTLFGGI  VGELIIRKFD240
HLERLGYLRV  DDKLKKDIDR  GIYYWP266

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help