CAZyme3D

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Entry ID

Information for CAZyme ID: QQK40170.1

Basic Information

GenBank IDQQK40170.1
FamilyAA3_2
Sequence Length508
UniProt IDA0A7T6XFG5(100,100)Download
Average pLDDT?83.89
CAZy50 ID67126
CAZy50 RepYes, QQK40170.1
Structure ClusterSC_AA3_clus95
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID36651
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderEurotiales
FamilyAspergillaceae
GenusPenicillium
SpeciesPenicillium digitatum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGNETLQQFA  ALDLDYLIVG  GGTAGLAVAA  RLTSDPEFCV  GVIEAGPSVL  NIDDNGAINV60
PGRYGETIGS  KYDWKFKTTP  QPELGNEGWG  WEDLLPFFRR  SENFHPPSAA  HQKHYQSSYD120
PQIYGTKGPL  HTSHTKQYGP  THQYWHETLN  SLGVRSTRDS  LAGDNTGVWN  LICTIDPDTQ180
ERSYSASAYY  QPIATRPNLH  ILTGATALEI  LFESEDDEWY  ATGARVRWNG  QEANIKACEE240
TIVCAGSVQS  PQLLELSGIG  NQVVLEAAGI  ETKVHSPNVG  ENLQEHMMTA  TIFEIPATIP300
TRDDILQDPI  QREAADRAYY  ASQTGPWTVM  PCSVAYCPLS  KILSPAECDE  LHTQAKEIAR360
KTGRTRDALL  ASQFDSGQAR  GQIEYLFDLG  PGEIDKKVMA  KALRWGDRIC  QTEPLAKLVH420
GRVFPPSNNG  ADSEEKVYEE  FVSNYTVTDW  HPVGTCAMGK  ADGTNAGVVN  DMLQVHGVHA480
LRVVDASIMP  LQAAELIIDD  YFARMGPL508

Predicted 3D structure by AlphaFold2 with pLDDT = 83.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MGNETLQQFA  ALDLDYLIVG  GGTAGLAVAA  RLTSDPEFCV  GVIEAGPSVL  NIDDNGAINV60
PGRYGETIGS  KYDWKFKTTP  QPELGNEGWG  WEDLLPFFRR  SENFHPPSAA  HQKHYQSSYD120
PQIYGTKGPL  HTSHTKQYGP  THQYWHETLN  SLGVRSTRDS  LAGDNTGVWN  LICTIDPDTQ180
ERSYSASAYY  QPIATRPNLH  ILTGATALEI  LFESEDDEWY  ATGARVRWNG  QEANIKACEE240
TIVCAGSVQS  PQLLELSGIG  NQVVLEAAGI  ETKVHSPNVG  ENLQEHMMTA  TIFEIPATIP300
TRDDILQDPI  QREAADRAYY  ASQTGPWTVM  PCSVAYCPLS  KILSPAECDE  LHTQAKEIAR360
KTGRTRDALL  ASQFDSGQAR  GQIEYLFDLG  PGEIDKKVMA  KALRWGDRIC  QTEPLAKLVH420
GRVFPPSNNG  ADSEEKVYEE  FVSNYTVTDW  HPVGTCAMGK  ADGTNAGVVN  DMLQVHGVHA480
LRVVDASIMP  LQAAELIIDD  YFARMGPL508

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(84-365)

MGNETLQQFA  ALDLDYLIVG  GGTAGLAVAA  RLTSDPEFCV  GVIEAGPSVL  NIDDNGAINV60
PGRYGETIGS  KYDWKFKTTP  QPELGNEGWG  WEDLLPFFRR  SENFHPPSAA  HQKHYQSSYD120
PQIYGTKGPL  HTSHTKQYGP  THQYWHETLN  SLGVRSTRDS  LAGDNTGVWN  LICTIDPDTQ180
ERSYSASAYY  QPIATRPNLH  ILTGATALEI  LFESEDDEWY  ATGARVRWNG  QEANIKACEE240
TIVCAGSVQS  PQLLELSGIG  NQVVLEAAGI  ETKVHSPNVG  ENLQEHMMTA  TIFEIPATIP300
TRDDILQDPI  QREAADRAYY  ASQTGPWTVM  PCSVAYCPLS  KILSPAECDE  LHTQAKEIAR360
KTGRTRDALL  ASQFDSGQAR  GQIEYLFDLG  PGEIDKKVMA  KALRWGDRIC  QTEPLAKLVH420
GRVFPPSNNG  ADSEEKVYEE  FVSNYTVTDW  HPVGTCAMGK  ADGTNAGVVN  DMLQVHGVHA480
LRVVDASIMP  LQAAELIIDD  YFARMGPL508

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help