CAZyme3D

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Entry ID

Information for CAZyme ID: QQG66276.1

Basic Information

GenBank IDQQG66276.1
FamilyGT9
Sequence Length353
UniProt IDA0A7T6AR08(100,100)Download
Average pLDDT?93.99
CAZy50 ID130410
CAZy50 RepYes, QQG66276.1
Structure ClusterSC_GT9_clus18
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1909699
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfobulbia
OrderDesulfobulbales
FamilyDesulfobulbaceae
GenusDesulfobulbus
SpeciesDesulfobulbus oligotrophicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNPLPHHPQK  ILIRSTNWIG  DAIMTTPAVR  TIRENFPDSE  ITMLVHPWVS  DVFRFSPRVD60
QIILYEKKGR  HRGIRGFLQL  AAELREKQFD  CAILLQNAFE  AALLTLLAGI  PVRGGYTTDG120
RGLLLTHGVR  RINELNKKHE  VNYYQRIMQG  LGCTPAPTEL  ELYVPGDQID  QAKQKISQYI180
GNTTGRVPVI  GFNPGAAFGP  AKRWPAEKFA  DLADRLAQKT  HAVFLLFGST  ADKETAATIK240
NLATIAAPQI  IDLTGTTTLI  EAMALIGECD  VFVTNDSGLM  HVAAALHTPL  VAIFGSTDHI300
ATGPFSDNAE  VIRRPLPCSP  CKKSQCPEKH  FRCMRLIDSK  EVCSAVLHML  KGS353

Predicted 3D structure by AlphaFold2 with pLDDT = 93.99 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNPLPHHPQK  ILIRSTNWIG  DAIMTTPAVR  TIRENFPDSE  ITMLVHPWVS  DVFRFSPRVD60
QIILYEKKGR  HRGIRGFLQL  AAELREKQFD  CAILLQNAFE  AALLTLLAGI  PVRGGYTTDG120
RGLLLTHGVR  RINELNKKHE  VNYYQRIMQG  LGCTPAPTEL  ELYVPGDQID  QAKQKISQYI180
GNTTGRVPVI  GFNPGAAFGP  AKRWPAEKFA  DLADRLAQKT  HAVFLLFGST  ADKETAATIK240
NLATIAAPQI  IDLTGTTTLI  EAMALIGECD  VFVTNDSGLM  HVAAALHTPL  VAIFGSTDHI300
ATGPFSDNAE  VIRRPLPCSP  CKKSQCPEKH  FRCMRLIDSK  EVCSAVLHML  KGS353

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT9(79-331)

MNPLPHHPQK  ILIRSTNWIG  DAIMTTPAVR  TIRENFPDSE  ITMLVHPWVS  DVFRFSPRVD60
QIILYEKKGR  HRGIRGFLQL  AAELREKQFD  CAILLQNAFE  AALLTLLAGI  PVRGGYTTDG120
RGLLLTHGVR  RINELNKKHE  VNYYQRIMQG  LGCTPAPTEL  ELYVPGDQID  QAKQKISQYI180
GNTTGRVPVI  GFNPGAAFGP  AKRWPAEKFA  DLADRLAQKT  HAVFLLFGST  ADKETAATIK240
NLATIAAPQI  IDLTGTTTLI  EAMALIGECD  VFVTNDSGLM  HVAAALHTPL  VAIFGSTDHI300
ATGPFSDNAE  VIRRPLPCSP  CKKSQCPEKH  FRCMRLIDSK  EVCSAVLHML  KGS353

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help