CAZyme3D

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Entry ID

Information for CAZyme ID: QQA30418.1

Basic Information

GenBank IDQQA30418.1
FamilyGH2
Sequence Length665
UniProt IDA0A173X169(100,100)Download
Average pLDDT?94.33
CAZy50 ID43030
CAZy50 RepYes, QQA30418.1
Structure ClusterSC_GH2_clus97
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID820
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides uniformis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRFIILFLF  SLGILSTCVF  AVEVIPLNEG  WNFHRGFQAP  ASEIVKVTLP  HTWNAGDGMF60
GNADYYRGLC  NYSRKLSVPA  HYRGKRFFLK  VMAAQTVADI  FIDHHFVMQH  KGGYTAFVAE120
LTDFLVPGTE  SVLEIRVSNA  QTMDVAPICG  DFNMFGGLYR  GVELLVTEDV  CIEPAYYASS180
GVFFTQSDVS  EKKAHLKIEA  LLSARETTVT  GCEVEFRLYD  KEKLLCRVAS  AEVGEDKKVM240
MDIVLERPHL  WDGVKNPYLY  KGVVILRKDG  KEIDRREEEI  GFRYFHADAE  KGFFLNGKPY300
RLNGVNRHQD  RAERASAFYP  QDHDEDLDLM  QEMGCNAVRL  CHYPQAKYMH  QQMDKRGLVA360
WAEIPFVNVY  VNNPAYDENL  RLQLKELILQ  NYNHPCILFW  GLFNEINSGW  LDRPSRMAAE420
LHALARQLDP  SRPTMGASNQ  DDDFNGFTDL  IAFNKYFGWY  GDNMDDMGRW  IDREHAAHPE480
RKMGISEYGA  GACVFQQEDS  LRHPEPWGQW  HPENWQTYYH  VENWKQLQER  EFLWCNFIWC540
MFDFSAAGRR  EGSIMGRNDK  GLVTYDRKIK  KDAFYFYKAN  WNQEDKFVYI  AGKRLVNRTR600
KTVDVQVFSN  SGAAKLYING  KAYGTAKPDS  VNVLEWKGIV  LDTGENRIEV  RNKYGADCCV660
WICPF665

Predicted 3D structure by AlphaFold2 with pLDDT = 94.33 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNRFIILFLF  SLGILSTCVF  AVEVIPLNEG  WNFHRGFQAP  ASEIVKVTLP  HTWNAGDGMF60
GNADYYRGLC  NYSRKLSVPA  HYRGKRFFLK  VMAAQTVADI  FIDHHFVMQH  KGGYTAFVAE120
LTDFLVPGTE  SVLEIRVSNA  QTMDVAPICG  DFNMFGGLYR  GVELLVTEDV  CIEPAYYASS180
GVFFTQSDVS  EKKAHLKIEA  LLSARETTVT  GCEVEFRLYD  KEKLLCRVAS  AEVGEDKKVM240
MDIVLERPHL  WDGVKNPYLY  KGVVILRKDG  KEIDRREEEI  GFRYFHADAE  KGFFLNGKPY300
RLNGVNRHQD  RAERASAFYP  QDHDEDLDLM  QEMGCNAVRL  CHYPQAKYMH  QQMDKRGLVA360
WAEIPFVNVY  VNNPAYDENL  RLQLKELILQ  NYNHPCILFW  GLFNEINSGW  LDRPSRMAAE420
LHALARQLDP  SRPTMGASNQ  DDDFNGFTDL  IAFNKYFGWY  GDNMDDMGRW  IDREHAAHPE480
RKMGISEYGA  GACVFQQEDS  LRHPEPWGQW  HPENWQTYYH  VENWKQLQER  EFLWCNFIWC540
MFDFSAAGRR  EGSIMGRNDK  GLVTYDRKIK  KDAFYFYKAN  WNQEDKFVYI  AGKRLVNRTR600
KTVDVQVFSN  SGAAKLYING  KAYGTAKPDS  VNVLEWKGIV  LDTGENRIEV  RNKYGADCCV660
WICPF665

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(23-582)

MNRFIILFLF  SLGILSTCVF  AVEVIPLNEG  WNFHRGFQAP  ASEIVKVTLP  HTWNAGDGMF60
GNADYYRGLC  NYSRKLSVPA  HYRGKRFFLK  VMAAQTVADI  FIDHHFVMQH  KGGYTAFVAE120
LTDFLVPGTE  SVLEIRVSNA  QTMDVAPICG  DFNMFGGLYR  GVELLVTEDV  CIEPAYYASS180
GVFFTQSDVS  EKKAHLKIEA  LLSARETTVT  GCEVEFRLYD  KEKLLCRVAS  AEVGEDKKVM240
MDIVLERPHL  WDGVKNPYLY  KGVVILRKDG  KEIDRREEEI  GFRYFHADAE  KGFFLNGKPY300
RLNGVNRHQD  RAERASAFYP  QDHDEDLDLM  QEMGCNAVRL  CHYPQAKYMH  QQMDKRGLVA360
WAEIPFVNVY  VNNPAYDENL  RLQLKELILQ  NYNHPCILFW  GLFNEINSGW  LDRPSRMAAE420
LHALARQLDP  SRPTMGASNQ  DDDFNGFTDL  IAFNKYFGWY  GDNMDDMGRW  IDREHAAHPE480
RKMGISEYGA  GACVFQQEDS  LRHPEPWGQW  HPENWQTYYH  VENWKQLQER  EFLWCNFIWC540
MFDFSAAGRR  EGSIMGRNDK  GLVTYDRKIK  KDAFYFYKAN  WNQEDKFVYI  AGKRLVNRTR600
KTVDVQVFSN  SGAAKLYING  KAYGTAKPDS  VNVLEWKGIV  LDTGENRIEV  RNKYGADCCV660
WICPF665

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help