CAZyme3D

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Entry ID

Information for CAZyme ID: QOY40502.1

Basic Information

GenBank IDQOY40502.1
FamilyCBM20
Sequence Length676
UniProt IDA0A7S7LFD7(100,100)Download
Average pLDDT?74.66
CAZy50 ID41552
CAZy50 RepYes, QOY40502.1
Structure ClusterSC_CBM20_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID5807
KingdomEukaryota
PhylumApicomplexa
ClassConoidasida
OrderEucoccidiorida
FamilyCryptosporidiidae
GenusCryptosporidium
SpeciesCryptosporidium parvum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVLISWECVC  DLTHPGQSLY  VVGSHPRLGA  WKITTEQEEN  KPIRLITDKL  SYPVWRTSEP60
IRIRGACLLE  YKFIISKETE  PYENLEWEPI  QGNRYLQVDE  NFPEYKYIIH  CSWGNISKST120
IRFEEYFGND  GKVDDYSYRA  KPGARYISPE  NAEIYSEEDE  EPKDRGAYES  SVTPPLMLSR180
TGSRLRLLLD  RSRFILSTKG  DINQYYTLEN  TIGRGSWGEV  KIAVQKGTRI  RRAAKKIPKY240
FVEDVDRFKQ  EIEIMKSLDH  PNIIRLYETF  EDNTDIYLVM  ELCTGGELFE  RVVHKRVFRE300
SDAARIMKDV  LSAVAYCHKL  NVAHRDLKPE  NFLFLTDSPD  SPLKLIDFGL  AARFKPGKMM360
RTKVGTPYYV  SPQVLEGLYG  PECDEWSAGV  MMYVLLCGYP  PFSAPTDSEV  MLKIREGTFT420
FPEKDWLNVS  PQAESLIRRL  LTKSPKQRIT  SLQALEHEWF  EKQLSSSPRN  LLLDNVISNF480
RRFQGLSRLK  KIALTLIAQN  IDERDILDLH  DTFMELDTSR  DGTLSRAEII  EGINRTGCSP540
TIGIDALLDE  IDPEGTDTIS  YTDFIAACIQ  ERQMSHESAC  KAAFRVFDID  GDGQISNIEF600
LKVMSLSSKA  KKSDDELAQE  LSEFMKSGDL  DKDGTINFDE  FCHVMRRVPS  KFLLGEASDD660
TINMMKRCSS  RTNINL676

Predicted 3D structure by AlphaFold2 with pLDDT = 74.66 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVLISWECVC  DLTHPGQSLY  VVGSHPRLGA  WKITTEQEEN  KPIRLITDKL  SYPVWRTSEP60
IRIRGACLLE  YKFIISKETE  PYENLEWEPI  QGNRYLQVDE  NFPEYKYIIH  CSWGNISKST120
IRFEEYFGND  GKVDDYSYRA  KPGARYISPE  NAEIYSEEDE  EPKDRGAYES  SVTPPLMLSR180
TGSRLRLLLD  RSRFILSTKG  DINQYYTLEN  TIGRGSWGEV  KIAVQKGTRI  RRAAKKIPKY240
FVEDVDRFKQ  EIEIMKSLDH  PNIIRLYETF  EDNTDIYLVM  ELCTGGELFE  RVVHKRVFRE300
SDAARIMKDV  LSAVAYCHKL  NVAHRDLKPE  NFLFLTDSPD  SPLKLIDFGL  AARFKPGKMM360
RTKVGTPYYV  SPQVLEGLYG  PECDEWSAGV  MMYVLLCGYP  PFSAPTDSEV  MLKIREGTFT420
FPEKDWLNVS  PQAESLIRRL  LTKSPKQRIT  SLQALEHEWF  EKQLSSSPRN  LLLDNVISNF480
RRFQGLSRLK  KIALTLIAQN  IDERDILDLH  DTFMELDTSR  DGTLSRAEII  EGINRTGCSP540
TIGIDALLDE  IDPEGTDTIS  YTDFIAACIQ  ERQMSHESAC  KAAFRVFDID  GDGQISNIEF600
LKVMSLSSKA  KKSDDELAQE  LSEFMKSGDL  DKDGTINFDE  FCHVMRRVPS  KFLLGEASDD660
TINMMKRCSS  RTNINL676

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM20(11-101)

MVLISWECVC  DLTHPGQSLY  VVGSHPRLGA  WKITTEQEEN  KPIRLITDKL  SYPVWRTSEP60
IRIRGACLLE  YKFIISKETE  PYENLEWEPI  QGNRYLQVDE  NFPEYKYIIH  CSWGNISKST120
IRFEEYFGND  GKVDDYSYRA  KPGARYISPE  NAEIYSEEDE  EPKDRGAYES  SVTPPLMLSR180
TGSRLRLLLD  RSRFILSTKG  DINQYYTLEN  TIGRGSWGEV  KIAVQKGTRI  RRAAKKIPKY240
FVEDVDRFKQ  EIEIMKSLDH  PNIIRLYETF  EDNTDIYLVM  ELCTGGELFE  RVVHKRVFRE300
SDAARIMKDV  LSAVAYCHKL  NVAHRDLKPE  NFLFLTDSPD  SPLKLIDFGL  AARFKPGKMM360
RTKVGTPYYV  SPQVLEGLYG  PECDEWSAGV  MMYVLLCGYP  PFSAPTDSEV  MLKIREGTFT420
FPEKDWLNVS  PQAESLIRRL  LTKSPKQRIT  SLQALEHEWF  EKQLSSSPRN  LLLDNVISNF480
RRFQGLSRLK  KIALTLIAQN  IDERDILDLH  DTFMELDTSR  DGTLSRAEII  EGINRTGCSP540
TIGIDALLDE  IDPEGTDTIS  YTDFIAACIQ  ERQMSHESAC  KAAFRVFDID  GDGQISNIEF600
LKVMSLSSKA  KKSDDELAQE  LSEFMKSGDL  DKDGTINFDE  FCHVMRRVPS  KFLLGEASDD660
TINMMKRCSS  RTNINL676

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help