CAZyme3D

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Entry ID

Information for CAZyme ID: QOX63304.1

Basic Information

GenBank IDQOX63304.1
FamilyGT26
Sequence Length253
UniProt IDA0A7S7ESF1(100,100)Download
Average pLDDT?87.42
CAZy50 ID171185
CAZy50 RepYes, QOX63304.1
Structure ClusterSC_GT26_clus16
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1898207
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
Family
Genus
SpeciesClostridiales bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPSNRRIKIL  NIPVDMVEYP  AAMEIFRKLM  SSAGCSQIVT  PNSEIIVNAT  KDKELKEIIE60
QADLVIPDGI  GLVYASRIMG  MPLSERVTGI  DFLSSILEYL  EETGQSVFFL  GSKPGDGGAP120
GIAELAAEKI  KEKYTNLKIA  GVHHGYFKEA  DEQELISKIN  ASGADFLCAA  LGSPKQEKFV180
FTHRNQLNVK  AAIGVGGSLD  VWAGTLKRAP  EFYRNHGLEW  LYRFIQQPSR  YKRMAALPLF240
MIKVLLSKLK  GGK253

Predicted 3D structure by AlphaFold2 with pLDDT = 87.42 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPSNRRIKIL  NIPVDMVEYP  AAMEIFRKLM  SSAGCSQIVT  PNSEIIVNAT  KDKELKEIIE60
QADLVIPDGI  GLVYASRIMG  MPLSERVTGI  DFLSSILEYL  EETGQSVFFL  GSKPGDGGAP120
GIAELAAEKI  KEKYTNLKIA  GVHHGYFKEA  DEQELISKIN  ASGADFLCAA  LGSPKQEKFV180
FTHRNQLNVK  AAIGVGGSLD  VWAGTLKRAP  EFYRNHGLEW  LYRFIQQPSR  YKRMAALPLF240
MIKVLLSKLK  GGK253

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT26(58-234)

MPSNRRIKIL  NIPVDMVEYP  AAMEIFRKLM  SSAGCSQIVT  PNSEIIVNAT  KDKELKEIIE60
QADLVIPDGI  GLVYASRIMG  MPLSERVTGI  DFLSSILEYL  EETGQSVFFL  GSKPGDGGAP120
GIAELAAEKI  KEKYTNLKIA  GVHHGYFKEA  DEQELISKIN  ASGADFLCAA  LGSPKQEKFV180
FTHRNQLNVK  AAIGVGGSLD  VWAGTLKRAP  EFYRNHGLEW  LYRFIQQPSR  YKRMAALPLF240
MIKVLLSKLK  GGK253

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help