CAZyme3D

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Entry ID

Information for CAZyme ID: QOV19890.1

Basic Information

GenBank IDQOV19890.1
FamilyCBM6, GH76
Sequence Length496
UniProt IDA0A7M2RKM9(100,100)Download
Average pLDDT?91.17
CAZy50 ID69762
CAZy50 RepYes, QOV19890.1
Structure ClusterSC_CBM6_clus10, SC_GH76_clus64
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2779518
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusBlautia
SpeciesBlautia liquoris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MERKRNYKET  KTSSPTEKVK  VLDYDIDFEQ  IAYDAFTAYI  DNFYTHDEEE  DVWRFGGFWT60
GAETFEIVID  AYEHTGDARY  KEMIDQIYEG  FTKDYKHQEV  EGWWGGNDYN  DDLMWITIAC120
ARSYLATEDT  KYLATAKVNF  DNTYARAWSD  ELGGGLFWRA  DNKTKNACVN  GPGAIAACFL180
GEALDDESYF  EKAKNILEWE  REVLFDPVTG  HIDDNVGLNG  GRNSWASTYN  QGTFIGASCL240
LYDHYGKEKY  LSDAVLAADY  TMIDMYHYGV  MNNEESGEDL  PGFKGIFTRW  LNDLIVNHNQ300
PQYIDWMQYN  ARTAWNNRNS  AGITKTQWGK  KTEDSESPSS  WDASAATALY  QNTPNSKDLI360
RSAFHPIPAK  DFDSVRNITI  KTENGMKYVG  DIKNGAYTVY  HNVDFGNIAP  EAVEFQVFLE420
VAGGSIELHV  KSQKGEPAAV  LDVTKAQNAN  KAINNWTNQA  TKMTTKVTGL  QTVYLVYKTE480
ESQSYKLNFF  RFLAEN496

Predicted 3D structure by AlphaFold2 with pLDDT = 91.17 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MERKRNYKET  KTSSPTEKVK  VLDYDIDFEQ  IAYDAFTAYI  DNFYTHDEEE  DVWRFGGFWT60
GAETFEIVID  AYEHTGDARY  KEMIDQIYEG  FTKDYKHQEV  EGWWGGNDYN  DDLMWITIAC120
ARSYLATEDT  KYLATAKVNF  DNTYARAWSD  ELGGGLFWRA  DNKTKNACVN  GPGAIAACFL180
GEALDDESYF  EKAKNILEWE  REVLFDPVTG  HIDDNVGLNG  GRNSWASTYN  QGTFIGASCL240
LYDHYGKEKY  LSDAVLAADY  TMIDMYHYGV  MNNEESGEDL  PGFKGIFTRW  LNDLIVNHNQ300
PQYIDWMQYN  ARTAWNNRNS  AGITKTQWGK  KTEDSESPSS  WDASAATALY  QNTPNSKDLI360
RSAFHPIPAK  DFDSVRNITI  KTENGMKYVG  DIKNGAYTVY  HNVDFGNIAP  EAVEFQVFLE420
VAGGSIELHV  KSQKGEPAAV  LDVTKAQNAN  KAINNWTNQA  TKMTTKVTGL  QTVYLVYKTE480
ESQSYKLNFF  RFLAEN496

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH76(29-338)+CBM6(371-492)

MERKRNYKET  KTSSPTEKVK  VLDYDIDFEQ  IAYDAFTAYI  DNFYTHDEEE  DVWRFGGFWT60
GAETFEIVID  AYEHTGDARY  KEMIDQIYEG  FTKDYKHQEV  EGWWGGNDYN  DDLMWITIAC120
ARSYLATEDT  KYLATAKVNF  DNTYARAWSD  ELGGGLFWRA  DNKTKNACVN  GPGAIAACFL180
GEALDDESYF  EKAKNILEWE  REVLFDPVTG  HIDDNVGLNG  GRNSWASTYN  QGTFIGASCL240
LYDHYGKEKY  LSDAVLAADY  TMIDMYHYGV  MNNEESGEDL  PGFKGIFTRW  LNDLIVNHNQ300
PQYIDWMQYN  ARTAWNNRNS  AGITKTQWGK  KTEDSESPSS  WDASAATALY  QNTPNSKDLI360
RSAFHPIPAK  DFDSVRNITI  KTENGMKYVG  DIKNGAYTVY  HNVDFGNIAP  EAVEFQVFLE420
VAGGSIELHV  KSQKGEPAAV  LDVTKAQNAN  KAINNWTNQA  TKMTTKVTGL  QTVYLVYKTE480
ESQSYKLNFF  RFLAEN496

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help