CAZyme3D

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Entry ID

Information for CAZyme ID: QOT12851.1

Basic Information

GenBank IDQOT12851.1
FamilyCBM32, CBM70, PL35
Sequence Length1470
UniProt IDA0A2A5LR86(98.4,100)Download
Average pLDDT?90.37
CAZy50 ID4221
CAZy50 RepYes, QOT12851.1
Structure ClusterSC_CBM32_clus21, SC_CBM32_clus40, SC_CBM70_clus1, SC_CBM70_clus4, SC_PL35_clus24
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2777984
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus sp. JNUCC32
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A2A5LR86.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRMALIVLV  LITGLHGFLP  PPLAWAESER  DQVQEGLLVN  SGFEATEAGS  SWSGGIKPAN60
WGQWLPTGSP  ILGVDSGIFK  SGKQSVSIEG  PAGTSSRAAI  TQSIPVEVGK  TYRISGWVKT120
ESVSNAALIR  YQMKRTGTSN  VLVHVGTLKG  TQDWTYMEKL  FTVPDNAASP  PLLTVELFLE180
TGTGKAWFDD  VLVEEPLQSI  AIEPDVAYLN  TGETITPSVR  YEPGSSPPPQ  LQWSPSNPEV240
VEVTDQGDVT  GLSTGLATVT  AATYDGAHTA  SMAVSVNAPD  TLLVDDYEGE  TAQGQALLGQ300
LSARDSSGAD  HTYLLVSQPA  HGKITVKENG  SFTYYPDSGF  SGTDLFQFAA  LQADTGGAKF360
GQGTIHVTPV  NAAPLLDLEW  GYTTMNTSLS  GQFTKAKDPD  GDPIAWKLEA  PPSQGTVQVD420
AEGTYRYAPN  ENYLGYDRFR  VSAEDGRGGR  TESDMLVFVG  PTADRISESL  HGHASSTRSH480
PRLLASTDDL  NRSKQLLASG  DRYMTEWMEL  LRNQADPVLA  TSPLTYQPNG  GNAYMLRDRL540
IPTALMYRLT  GESRYAERAW  QELEAMTHYP  DWGGRTNNIL  ALSELSFAVA  LAYDWIYDDL600
NEAQRSQLNA  AIRDHALAVA  LDWYRGEFRH  NGEHNNINLV  DNGGLGLLAL  TVADEPETED660
QALEVIQSTF  QKLQYALRHY  TVDGSWPEGP  AYWHYGGQYL  AMYIQGLNKS  LGTDFGLSLL720
PGYEASGAYP  YHLLGEGGVF  NFYDGGVSYN  MYESLWFASF  FNKPEYAWFI  GDLYERKGYF780
HPLYLVFYEP  GMFETVPTEL  DRFFTGIESA  SMRSAWDDPY  ALFASMKGVN  ETMRSHNDLD840
GGTFVFDALG  VRWASDLGNE  SYSLPGFWDY  NYNRWTYYRK  KTEGHNTIVI  NPVQNPIVQQ900
EPYGTAVTIK  KESKPRGAYT  ILDMTDLYRK  DAGEMLRGMK  LSADRRELVI  QDEMKLKLPS960
ELYWFMHTGA  DVEIVKNGRA  AILSQLDKRL  YVELVEGPAG  ARFSVMDAAP  LATSPNPDGQ1020
SSNEGMRKLT  IHLEHVQDVR  LSVRMVPLYA  NDPLPPAETG  YTPLLEWTIP  DGDLPEPAAR1080
PMANRLFMDG  MPLHGFRPEI  TYYEVGLPFD  APSPPVMTAE  AEHAVSIDQA  ETIPGTATIV1140
IQNDAQPNLS  NKYTIKFTRN  PAIGEPPNHL  KYQVRHVTAS  AVPESANIPE  HTVDGNLSTR1200
WSAPGTEYVQ  LDLGEPKPVG  AVSLAIYLGD  TRKNRFDVLA  SVDGEEWSTI  YENGLTSGTT1260
VQPETFLVEQ  TTARYIRILG  QGNNANPWNS  FTEVGVYPLA  PIVMRVEASD  ELELGESGQI1320
EAWYGFPGGM  REQAEELTYT  SDAPDIIQVS  STGRMKAISP  GSAAISVKDQ  RYGFVETLHV1380
TAAFDGNQPF  LRLLGKDLMT  SKTTQQLRAE  LLHPDGRKES  LDKLSYRSSN  PHIISVNAQG1440
VARANQSGIA  VVSVTDRTSG  KTDSMAITVR  1470

Predicted 3D structure by AlphaFold2 with pLDDT = 90.37 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKRMALIVLV  LITGLHGFLP  PPLAWAESER  DQVQEGLLVN  SGFEATEAGS  SWSGGIKPAN60
WGQWLPTGSP  ILGVDSGIFK  SGKQSVSIEG  PAGTSSRAAI  TQSIPVEVGK  TYRISGWVKT120
ESVSNAALIR  YQMKRTGTSN  VLVHVGTLKG  TQDWTYMEKL  FTVPDNAASP  PLLTVELFLE180
TGTGKAWFDD  VLVEEPLQSI  AIEPDVAYLN  TGETITPSVR  YEPGSSPPPQ  LQWSPSNPEV240
VEVTDQGDVT  GLSTGLATVT  AATYDGAHTA  SMAVSVNAPD  TLLVDDYEGE  TAQGQALLGQ300
LSARDSSGAD  HTYLLVSQPA  HGKITVKENG  SFTYYPDSGF  SGTDLFQFAA  LQADTGGAKF360
GQGTIHVTPV  NAAPLLDLEW  GYTTMNTSLS  GQFTKAKDPD  GDPIAWKLEA  PPSQGTVQVD420
AEGTYRYAPN  ENYLGYDRFR  VSAEDGRGGR  TESDMLVFVG  PTADRISESL  HGHASSTRSH480
PRLLASTDDL  NRSKQLLASG  DRYMTEWMEL  LRNQADPVLA  TSPLTYQPNG  GNAYMLRDRL540
IPTALMYRLT  GESRYAERAW  QELEAMTHYP  DWGGRTNNIL  ALSELSFAVA  LAYDWIYDDL600
NEAQRSQLNA  AIRDHALAVA  LDWYRGEFRH  NGEHNNINLV  DNGGLGLLAL  TVADEPETED660
QALEVIQSTF  QKLQYALRHY  TVDGSWPEGP  AYWHYGGQYL  AMYIQGLNKS  LGTDFGLSLL720
PGYEASGAYP  YHLLGEGGVF  NFYDGGVSYN  MYESLWFASF  FNKPEYAWFI  GDLYERKGYF780
HPLYLVFYEP  GMFETVPTEL  DRFFTGIESA  SMRSAWDDPY  ALFASMKGVN  ETMRSHNDLD840
GGTFVFDALG  VRWASDLGNE  SYSLPGFWDY  NYNRWTYYRK  KTEGHNTIVI  NPVQNPIVQQ900
EPYGTAVTIK  KESKPRGAYT  ILDMTDLYRK  DAGEMLRGMK  LSADRRELVI  QDEMKLKLPS960
ELYWFMHTGA  DVEIVKNGRA  AILSQLDKRL  YVELVEGPAG  ARFSVMDAAP  LATSPNPDGQ1020
SSNEGMRKLT  IHLEHVQDVR  LSVRMVPLYA  NDPLPPAETG  YTPLLEWTIP  DGDLPEPAAR1080
PMANRLFMDG  MPLHGFRPEI  TYYEVGLPFD  APSPPVMTAE  AEHAVSIDQA  ETIPGTATIV1140
IQNDAQPNLS  NKYTIKFTRN  PAIGEPPNHL  KYQVRHVTAS  AVPESANIPE  HTVDGNLSTR1200
WSAPGTEYVQ  LDLGEPKPVG  AVSLAIYLGD  TRKNRFDVLA  SVDGEEWSTI  YENGLTSGTT1260
VQPETFLVEQ  TTARYIRILG  QGNNANPWNS  FTEVGVYPLA  PIVMRVEASD  ELELGESGQI1320
EAWYGFPGGM  REQAEELTYT  SDAPDIIQVS  STGRMKAISP  GSAAISVKDQ  RYGFVETLHV1380
TAAFDGNQPF  LRLLGKDLMT  SKTTQQLRAE  LLHPDGRKES  LDKLSYRSSN  PHIISVNAQG1440
VARANQSGIA  VVSVTDRTSG  KTDSMAITVR  1470

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM70(37-193)+PL35(821-996)+CBM32(1180-1293)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help