Information for CAZyme ID: QOS40601.1
Basic Information
GenBank ID | QOS40601.1 |
Family | GH5_4 |
Sequence Length | 382 |
UniProt ID | A0A840SA32(100,100)![]() |
Average pLDDT? | 91.88 |
CAZy50 ID | 110605 |
CAZy50 Rep | Yes, QOS40601.1 |
Structure Cluster | SC_GH5_clus115 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 744512 |
Kingdom | Bacteria |
Phylum | Spirochaetota |
Class | Spirochaetia |
Order | Spirochaetales |
Family | Treponemataceae |
Genus | Treponema |
Species | Treponema rectale |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MKNRCLRLLM GMLIPAFFSC GEMKQLTSSA DTVDFDMTFT DITATDAVKE MGNGWNLGNT | 60 |
LEATGGETAW GAPVTTYKML QGVKNCGFDS VRVPVAWYTN GVTSVNKNKG NYKITSAWMN | 120 |
RVDEIVSYVL ASDMYCIINI HWDGNWWEDF YSDNEEERET AAEIYSSLWT QIAEHYKDYP | 180 |
EKLIFENANE ELKGNSDWQY EVSNVDINQT FVDLIRSSGG NNDRRVLLIA GINTDIDKTC | 240 |
DSRFKMPSDT IENHLMLSVH YYTPWTYCGM WEDADWGSVQ WDWGSEEDYA LMETQLAKME | 300 |
KFTSAGVPVV FGEFSTCESD TIAPHVKDGW DKFLQNFVDL CRLNGQMCPM VWDIQCAYPW | 360 |
YDRYKCKFNS SYPELYTIFA RQ | 382 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.88 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MKNRCLRLLM GMLIPAFFSC GEMKQLTSSA DTVDFDMTFT DITATDAVKE MGNGWNLGNT | 60 |
LEATGGETAW GAPVTTYKML QGVKNCGFDS VRVPVAWYTN GVTSVNKNKG NYKITSAWMN | 120 |
RVDEIVSYVL ASDMYCIINI HWDGNWWEDF YSDNEEERET AAEIYSSLWT QIAEHYKDYP | 180 |
EKLIFENANE ELKGNSDWQY EVSNVDINQT FVDLIRSSGG NNDRRVLLIA GINTDIDKTC | 240 |
DSRFKMPSDT IENHLMLSVH YYTPWTYCGM WEDADWGSVQ WDWGSEEDYA LMETQLAKME | 300 |
KFTSAGVPVV FGEFSTCESD TIAPHVKDGW DKFLQNFVDL CRLNGQMCPM VWDIQCAYPW | 360 |
YDRYKCKFNS SYPELYTIFA RQ | 382 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.