CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QOS40601.1

Basic Information

GenBank IDQOS40601.1
FamilyGH5_4
Sequence Length382
UniProt IDA0A840SA32(100,100)Download
Average pLDDT?91.88
CAZy50 ID110605
CAZy50 RepYes, QOS40601.1
Structure ClusterSC_GH5_clus115
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID744512
KingdomBacteria
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema rectale

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNRCLRLLM  GMLIPAFFSC  GEMKQLTSSA  DTVDFDMTFT  DITATDAVKE  MGNGWNLGNT60
LEATGGETAW  GAPVTTYKML  QGVKNCGFDS  VRVPVAWYTN  GVTSVNKNKG  NYKITSAWMN120
RVDEIVSYVL  ASDMYCIINI  HWDGNWWEDF  YSDNEEERET  AAEIYSSLWT  QIAEHYKDYP180
EKLIFENANE  ELKGNSDWQY  EVSNVDINQT  FVDLIRSSGG  NNDRRVLLIA  GINTDIDKTC240
DSRFKMPSDT  IENHLMLSVH  YYTPWTYCGM  WEDADWGSVQ  WDWGSEEDYA  LMETQLAKME300
KFTSAGVPVV  FGEFSTCESD  TIAPHVKDGW  DKFLQNFVDL  CRLNGQMCPM  VWDIQCAYPW360
YDRYKCKFNS  SYPELYTIFA  RQ382

Predicted 3D structure by AlphaFold2 with pLDDT = 91.88 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKNRCLRLLM  GMLIPAFFSC  GEMKQLTSSA  DTVDFDMTFT  DITATDAVKE  MGNGWNLGNT60
LEATGGETAW  GAPVTTYKML  QGVKNCGFDS  VRVPVAWYTN  GVTSVNKNKG  NYKITSAWMN120
RVDEIVSYVL  ASDMYCIINI  HWDGNWWEDF  YSDNEEERET  AAEIYSSLWT  QIAEHYKDYP180
EKLIFENANE  ELKGNSDWQY  EVSNVDINQT  FVDLIRSSGG  NNDRRVLLIA  GINTDIDKTC240
DSRFKMPSDT  IENHLMLSVH  YYTPWTYCGM  WEDADWGSVQ  WDWGSEEDYA  LMETQLAKME300
KFTSAGVPVV  FGEFSTCESD  TIAPHVKDGW  DKFLQNFVDL  CRLNGQMCPM  VWDIQCAYPW360
YDRYKCKFNS  SYPELYTIFA  RQ382

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_4(67-353)

MKNRCLRLLM  GMLIPAFFSC  GEMKQLTSSA  DTVDFDMTFT  DITATDAVKE  MGNGWNLGNT60
LEATGGETAW  GAPVTTYKML  QGVKNCGFDS  VRVPVAWYTN  GVTSVNKNKG  NYKITSAWMN120
RVDEIVSYVL  ASDMYCIINI  HWDGNWWEDF  YSDNEEERET  AAEIYSSLWT  QIAEHYKDYP180
EKLIFENANE  ELKGNSDWQY  EVSNVDINQT  FVDLIRSSGG  NNDRRVLLIA  GINTDIDKTC240
DSRFKMPSDT  IENHLMLSVH  YYTPWTYCGM  WEDADWGSVQ  WDWGSEEDYA  LMETQLAKME300
KFTSAGVPVV  FGEFSTCESD  TIAPHVKDGW  DKFLQNFVDL  CRLNGQMCPM  VWDIQCAYPW360
YDRYKCKFNS  SYPELYTIFA  RQ382

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help