CAZyme3D

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Entry ID

Information for CAZyme ID: QOL49655.1

Basic Information

GenBank IDQOL49655.1
FamilyGH3
Sequence Length519
UniProt IDA0A7L9U670(100,100)Download
Average pLDDT?89.33
CAZy50 ID64993
CAZy50 RepYes, QOL49655.1
Structure ClusterSC_GH3_clus224
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2769491
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusMassilia
SpeciesMassilia litorea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDDLKKIAGQ  LIMVRLFGTE  LDEDTARFLA  ANRVRGACLF  RQNMTDAAQL  TRLTGALRAV60
MGPEALIALD  QEGGAVVRST  WVPAPPSAMA  IGAANDPILA  REVGAAVARA  VRSLGFNWNF120
APVLDLNNNP  HNPVIAERSF  GADPETATRI  ALAWMEGSEA  EGVACCVKHF  PGHGDTHVDS180
HRALPTVDKP  LAELERFEFA  PFRMAAPFAP  AMMTAHIVYP  ALDPDYPATM  SRPILTGILR240
EGWNYGGVII  TDGMDMHAIA  HRYGVGQAAV  RALVAGADMV  MAIGSRETQE  ETIEAIAAAI300
ASGELPMAEV  EARLARLAKL  AAAHPAGGIA  RPAAAVTAAN  APEVMGSEAP  GADEAPIYTT360
DIEDRALMAR  AWQRGLSSRG  AVVRPSPGAR  VRLVARQDVV  SDGVSEAGVP  AAAIAASLAQ420
LFEVELVTFA  DADTFDWSAL  PQDGRFTILA  STSRRRYGPH  VRATWRPDLH  LALWNPYQAL480
DVEAPALMTY  GFAAPALAAV  NAWLAGEIEA  TGQCPVPGF519

Predicted 3D structure by AlphaFold2 with pLDDT = 89.33 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MDDLKKIAGQ  LIMVRLFGTE  LDEDTARFLA  ANRVRGACLF  RQNMTDAAQL  TRLTGALRAV60
MGPEALIALD  QEGGAVVRST  WVPAPPSAMA  IGAANDPILA  REVGAAVARA  VRSLGFNWNF120
APVLDLNNNP  HNPVIAERSF  GADPETATRI  ALAWMEGSEA  EGVACCVKHF  PGHGDTHVDS180
HRALPTVDKP  LAELERFEFA  PFRMAAPFAP  AMMTAHIVYP  ALDPDYPATM  SRPILTGILR240
EGWNYGGVII  TDGMDMHAIA  HRYGVGQAAV  RALVAGADMV  MAIGSRETQE  ETIEAIAAAI300
ASGELPMAEV  EARLARLAKL  AAAHPAGGIA  RPAAAVTAAN  APEVMGSEAP  GADEAPIYTT360
DIEDRALMAR  AWQRGLSSRG  AVVRPSPGAR  VRLVARQDVV  SDGVSEAGVP  AAAIAASLAQ420
LFEVELVTFA  DADTFDWSAL  PQDGRFTILA  STSRRRYGPH  VRATWRPDLH  LALWNPYQAL480
DVEAPALMTY  GFAAPALAAV  NAWLAGEIEA  TGQCPVPGF519

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(62-281)

MDDLKKIAGQ  LIMVRLFGTE  LDEDTARFLA  ANRVRGACLF  RQNMTDAAQL  TRLTGALRAV60
MGPEALIALD  QEGGAVVRST  WVPAPPSAMA  IGAANDPILA  REVGAAVARA  VRSLGFNWNF120
APVLDLNNNP  HNPVIAERSF  GADPETATRI  ALAWMEGSEA  EGVACCVKHF  PGHGDTHVDS180
HRALPTVDKP  LAELERFEFA  PFRMAAPFAP  AMMTAHIVYP  ALDPDYPATM  SRPILTGILR240
EGWNYGGVII  TDGMDMHAIA  HRYGVGQAAV  RALVAGADMV  MAIGSRETQE  ETIEAIAAAI300
ASGELPMAEV  EARLARLAKL  AAAHPAGGIA  RPAAAVTAAN  APEVMGSEAP  GADEAPIYTT360
DIEDRALMAR  AWQRGLSSRG  AVVRPSPGAR  VRLVARQDVV  SDGVSEAGVP  AAAIAASLAQ420
LFEVELVTFA  DADTFDWSAL  PQDGRFTILA  STSRRRYGPH  VRATWRPDLH  LALWNPYQAL480
DVEAPALMTY  GFAAPALAAV  NAWLAGEIEA  TGQCPVPGF519

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help