CAZyme3D

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Entry ID

Information for CAZyme ID: QOK25859.1

Basic Information

GenBank IDQOK25859.1
FamilyGT4
Sequence Length383
UniProt IDE5WG86(99.5,100)Download
Average pLDDT?90.79
CAZy50 ID109652
CAZy50 RepYes, QOK25859.1
Structure ClusterSC_GT4_clus864
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID665099
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusCytobacillus
SpeciesCytobacillus oceanisediminis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKVCHITTVH  PYKDIRIFIK  EAKSLQKNGY  EMHLIAPNAP  SAIIDGIQVH  GINLNRGDRQ60
NRLGRMIKTT  NLAYKKAMEI  NADLYHFHDP  ELIPAGLKLK  RQQKKVIYDV  HEDVPRQILQ120
KNWIPKLLRT  AISSVFEEYE  KRAVKKMDYV  VAATPFIKNR  FTSIGCNSID  ICNYPVLSEF180
DHRHSEEEVK  ENAVCYIGAI  SEIRGIFEMV  DSMSLVPDVH  LFLAGKFASD  AERELVKQKS240
GWKKVSELGY  LDREEIRNVL  SKSLAGLVVL  HPTINYKDAL  PIKLFEYMAA  GIPVIASDFP300
LWKEIVEKSD  CGICVDPLNP  KEIADAIQFY  IENPEEAKRM  GENGRRAVEQ  IYNWDLESKK360
LVSVYQTLLP  ENRFVRNKGE  VFG383

Predicted 3D structure by AlphaFold2 with pLDDT = 90.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKVCHITTVH  PYKDIRIFIK  EAKSLQKNGY  EMHLIAPNAP  SAIIDGIQVH  GINLNRGDRQ60
NRLGRMIKTT  NLAYKKAMEI  NADLYHFHDP  ELIPAGLKLK  RQQKKVIYDV  HEDVPRQILQ120
KNWIPKLLRT  AISSVFEEYE  KRAVKKMDYV  VAATPFIKNR  FTSIGCNSID  ICNYPVLSEF180
DHRHSEEEVK  ENAVCYIGAI  SEIRGIFEMV  DSMSLVPDVH  LFLAGKFASD  AERELVKQKS240
GWKKVSELGY  LDREEIRNVL  SKSLAGLVVL  HPTINYKDAL  PIKLFEYMAA  GIPVIASDFP300
LWKEIVEKSD  CGICVDPLNP  KEIADAIQFY  IENPEEAKRM  GENGRRAVEQ  IYNWDLESKK360
LVSVYQTLLP  ENRFVRNKGE  VFG383

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(189-342)

MKVCHITTVH  PYKDIRIFIK  EAKSLQKNGY  EMHLIAPNAP  SAIIDGIQVH  GINLNRGDRQ60
NRLGRMIKTT  NLAYKKAMEI  NADLYHFHDP  ELIPAGLKLK  RQQKKVIYDV  HEDVPRQILQ120
KNWIPRLLRT  AISSVFEEYE  KRAVKKMDYV  VAATPFIKNR  FTSIGCNSID  ICNYPVLSEF180
DHRHSEEEVK  ENAVCYIGAI  SKIRGIFEMV  DSMSLVPDVH  LFLAGKFASD  AERELVKQKS240
GWKKVSELGY  LDREEIRNVL  SKSLAGLVVL  HPTINYKDAL  PIKLFEYMAA  GIPVIASDFP300
LWKEIVEKSD  CGICVDPLNP  KEIADAIQFY  IENPEEAKRM  GENGRRAVEQ  IYNWDLESKK360
LVSVYQTLLP  ENRFVRNKGE  VFG383

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help