CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QNP74612.1

Basic Information

GenBank IDQNP74612.1
FamilyGH3
Sequence Length517
UniProt IDA0A7H0IP96(100,100)Download
Average pLDDT?89.81
CAZy50 ID65367
CAZy50 RepYes, QNP74612.1
Structure ClusterSC_GH3_clus246
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2768066
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces roseirectus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIKSCRLLTF  GSVSQRIPGV  TPSARPALPA  ALDEAAHRCL  VAGFAGTTTV  PDDLVELIHR60
GLGGVILFTR  NIRDADQVRE  LTSTLRNLRS  DLLIAIDNEG  GGIGHLVTAG  APEVPGNYAL120
GVVDDPALTA  ACADALAAHL  ASLGIGVSYA  PVADLQHRGE  NPIVRTRAFG  SDPAVVARHL180
EAWISATEAR  GVASCAKHFP  GHGGTVTDSH  YELAVDPRES  TELDLAPFRA  AIGAGVPMLM240
SAHVVFPALD  PALPATLSPY  ILGELLRGEL  GFDGVLVSDA  LEMKAIADGY  GEAAGARLAL300
AAGADQVIVA  VPELATTLAC  RDAVLGALRD  GSLGEERVGE  AAARVRRLAD  RYATPAVPGE360
AGSEEAGLAA  ARRAVDKGEL  ASAVAGAYVV  DLFPRPHPAL  NWGGESLVSA  VREVDPGADG420
VAVAGEPEDR  EEAVAEVLKE  AAGRPLVVAT  CDAELYPWQG  WVKKALVAAR  PDAVLVATGL480
PGAGDAGAVL  SYGRGRVNLR  AVAEVVAEPR  TGTAPRP517

Predicted 3D structure by AlphaFold2 with pLDDT = 89.81 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIKSCRLLTF  GSVSQRIPGV  TPSARPALPA  ALDEAAHRCL  VAGFAGTTTV  PDDLVELIHR60
GLGGVILFTR  NIRDADQVRE  LTSTLRNLRS  DLLIAIDNEG  GGIGHLVTAG  APEVPGNYAL120
GVVDDPALTA  ACADALAAHL  ASLGIGVSYA  PVADLQHRGE  NPIVRTRAFG  SDPAVVARHL180
EAWISATEAR  GVASCAKHFP  GHGGTVTDSH  YELAVDPRES  TELDLAPFRA  AIGAGVPMLM240
SAHVVFPALD  PALPATLSPY  ILGELLRGEL  GFDGVLVSDA  LEMKAIADGY  GEAAGARLAL300
AAGADQVIVA  VPELATTLAC  RDAVLGALRD  GSLGEERVGE  AAARVRRLAD  RYATPAVPGE360
AGSEEAGLAA  ARRAVDKGEL  ASAVAGAYVV  DLFPRPHPAL  NWGGESLVSA  VREVDPGADG420
VAVAGEPEDR  EEAVAEVLKE  AAGRPLVVAT  CDAELYPWQG  WVKKALVAAR  PDAVLVATGL480
PGAGDAGAVL  SYGRGRVNLR  AVAEVVAEPR  TGTAPRP517

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(87-308)

MIKSCRLLTF  GSVSQRIPGV  TPSARPALPA  ALDEAAHRCL  VAGFAGTTTV  PDDLVELIHR60
GLGGVILFTR  NIRDADQVRE  LTSTLRNLRS  DLLIAIDNEG  GGIGHLVTAG  APEVPGNYAL120
GVVDDPALTA  ACADALAAHL  ASLGIGVSYA  PVADLQHRGE  NPIVRTRAFG  SDPAVVARHL180
EAWISATEAR  GVASCAKHFP  GHGGTVTDSH  YELAVDPRES  TELDLAPFRA  AIGAGVPMLM240
SAHVVFPALD  PALPATLSPY  ILGELLRGEL  GFDGVLVSDA  LEMKAIADGY  GEAAGARLAL300
AAGADQVIVA  VPELATTLAC  RDAVLGALRD  GSLGEERVGE  AAARVRRLAD  RYATPAVPGE360
AGSEEAGLAA  ARRAVDKGEL  ASAVAGAYVV  DLFPRPHPAL  NWGGESLVSA  VREVDPGADG420
VAVAGEPEDR  EEAVAEVLKE  AAGRPLVVAT  CDAELYPWQG  WVKKALVAAR  PDAVLVATGL480
PGAGDAGAVL  SYGRGRVNLR  AVAEVVAEPR  TGTAPRP517

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help