CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QNL39961.1

Basic Information

GenBank IDQNL39961.1
FamilyPL6_1
Sequence Length758
UniProt IDA0A412D6T6(100,100)Download
Average pLDDT?94.48
CAZy50 ID31859
CAZy50 RepYes, QNL39961.1
Structure ClusterSC_PL6_clus22
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2763022
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides sp. M10

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MMTRKIHKAI  IASLLIGLPF  TSFAKRYDVT  LPEVASCLKT  AQPGDQIYIK  DGQYKDMQLK60
WTGKGTEKAP  IKIEALNPGK  VKIEGGSTLW  IAGEWMSVDG  LHFTDGYAPK  GSVIEFRNGQ120
ELANHCRLTN  CVIDGFNPSR  RDQAYSYILL  YGRHNRVDHC  SLTGKLNLGV  TLIVILNDER180
CLENHHQIDH  NYFGERPVYG  SNGAETMRVG  TSQQAYSSSN  TIIENNLFER  CSGEVEVISI240
KSSDNVIRNN  ILLECEGVVA  LRHGDRNTVN  NNLFIGNGLR  NTGGIRVVNA  GHQIYDNTLV300
GLAGTRFFSA  LGVMDAVPNS  LPNRYCQVVD  VKMYRNTFVD  CTNIEFGTGK  DMERTLAPDN360
VSFTDNIIIN  KELSQPYIAV  DDVSGIQFKG  NKVQLAKNYS  APGFTTEKLK  APQLPDQAAI420
RKDKGASWFE  NRVAQPSAKT  HKEYNAAPGT  DLSEIIRSAE  PGGIIVLAKG  TYPIQSAMFI480
DKPLTIRAAN  AANKPLVRFN  GEKPDNMVTI  ADGGELIIEN  IAFDGVLEPG  KALAKAGIST540
AIDMIQPYTL  TVDGCEFQNF  GEGGFFAIKG  TKATFAKSVT  IKNCFFRDLS  GDAINYAAEK600
DDIGRYNADD  MLIENCSFYR  LLGLPINIYR  GGSDESTAGP  YITIRHCNFA  DCCNKERGSV660
MRLIGPQVLT  VENCNFDNSG  RGGATIRLDE  ATWEKVRIAN  CNLWNSGRMV  TTTSQAIQGK720
MYNIRPAYIN  ADAYNYTPVP  GSELEKLSIG  LKKNSLPQ758

Predicted 3D structure by AlphaFold2 with pLDDT = 94.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MMTRKIHKAI  IASLLIGLPF  TSFAKRYDVT  LPEVASCLKT  AQPGDQIYIK  DGQYKDMQLK60
WTGKGTEKAP  IKIEALNPGK  VKIEGGSTLW  IAGEWMSVDG  LHFTDGYAPK  GSVIEFRNGQ120
ELANHCRLTN  CVIDGFNPSR  RDQAYSYILL  YGRHNRVDHC  SLTGKLNLGV  TLIVILNDER180
CLENHHQIDH  NYFGERPVYG  SNGAETMRVG  TSQQAYSSSN  TIIENNLFER  CSGEVEVISI240
KSSDNVIRNN  ILLECEGVVA  LRHGDRNTVN  NNLFIGNGLR  NTGGIRVVNA  GHQIYDNTLV300
GLAGTRFFSA  LGVMDAVPNS  LPNRYCQVVD  VKMYRNTFVD  CTNIEFGTGK  DMERTLAPDN360
VSFTDNIIIN  KELSQPYIAV  DDVSGIQFKG  NKVQLAKNYS  APGFTTEKLK  APQLPDQAAI420
RKDKGASWFE  NRVAQPSAKT  HKEYNAAPGT  DLSEIIRSAE  PGGIIVLAKG  TYPIQSAMFI480
DKPLTIRAAN  AANKPLVRFN  GEKPDNMVTI  ADGGELIIEN  IAFDGVLEPG  KALAKAGIST540
AIDMIQPYTL  TVDGCEFQNF  GEGGFFAIKG  TKATFAKSVT  IKNCFFRDLS  GDAINYAAEK600
DDIGRYNADD  MLIENCSFYR  LLGLPINIYR  GGSDESTAGP  YITIRHCNFA  DCCNKERGSV660
MRLIGPQVLT  VENCNFDNSG  RGGATIRLDE  ATWEKVRIAN  CNLWNSGRMV  TTTSQAIQGK720
MYNIRPAYIN  ADAYNYTPVP  GSELEKLSIG  LKKNSLPQ758

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL6(32-393)+PL6_1(451-656)

MMTRKIHKAI  IASLLIGLPF  TSFAKRYDVT  LPEVASCLKT  AQPGDQIYIK  DGQYKDMQLK60
WTGKGTEKAP  IKIEALNPGK  VKIEGGSTLW  IAGEWMSVDG  LHFTDGYAPK  GSVIEFRNGQ120
ELANHCRLTN  CVIDGFNPSR  RDQAYSYILL  YGRHNRVDHC  SLTGKLNLGV  TLIVILNDER180
CLENHHQIDH  NYFGERPVYG  SNGAETMRVG  TSQQAYSSSN  TIIENNLFER  CSGEVEVISI240
KSSDNVIRNN  ILLECEGVVA  LRHGDRNTVN  NNLFIGNGLR  NTGGIRVVNA  GHQIYDNTLV300
GLAGTRFFSA  LGVMDAVPNS  LPNRYCQVVD  VKMYRNTFVD  CTNIEFGTGK  DMERTLAPDN360
VSFTDNIIIN  KELSQPYIAV  DDVSGIQFKG  NKVQLAKNYS  APGFTTEKLK  APQLPDQAAI420
RKDKGASWFE  NRVAQPSAKT  HKEYNAAPGT  DLSEIIRSAE  PGGIIVLAKG  TYPIQSAMFI480
DKPLTIRAAN  AANKPLVRFN  GEKPDNMVTI  ADGGELIIEN  IAFDGVLEPG  KALAKAGIST540
AIDMIQPYTL  TVDGCEFQNF  GEGGFFAIKG  TKATFAKSVT  IKNCFFRDLS  GDAINYAAEK600
DDIGRYNADD  MLIENCSFYR  LLGLPINIYR  GGSDESTAGP  YITIRHCNFA  DCCNKERGSV660
MRLIGPQVLT  VENCNFDNSG  RGGATIRLDE  ATWEKVRIAN  CNLWNSGRMV  TTTSQAIQGK720
MYNIRPAYIN  ADAYNYTPVP  GSELEKLSIG  LKKNSLPQ758

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help