CAZyme3D

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Entry ID

Information for CAZyme ID: QNK81974.1

Basic Information

GenBank IDQNK81974.1
FamilyCBM11, GH3
Sequence Length1064
UniProt IDA0A7G8WNN1(100,100)Download
Average pLDDT?90.91
CAZy50 ID11704
CAZy50 RepYes, QNK81974.1
Structure ClusterSC_CBM11_clus4, SC_GH3_clus73
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2762325
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderNakamurellales
FamilyNakamurellaceae
GenusNakamurella
SpeciesNakamurella sp. PAMC28650

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRNRSRHYR  ALTGKLRRKV  AAISPAILVL  SLVTVAAAPP  AAAVSGPLPL  IENFEGSVPL60
GTGTPGLFGF  GSDAASIPKL  AVAAAADLPG  AVADNHALDV  PYTVGGYGGF  SYDLSAAQDW120
SPFGGFSFWV  EGTGSGQKVE  YEIKDGGADA  SHSELWQGFF  TDTAAGWHQV  LEPFAGLVRR180
GDYQPPGAPS  DGVLDLTSMW  GFAVNLPSGA  SGHLVFDEFS  LYGHSSAKFS  ATSSTYLVNA240
GQSASVGVKL  LLASGVLLTA  PVSVSYRLGG  GTAVTGTDFT  AASGAVTFPA  GSTALTVETI300
AVPTSAGTPA  GESKSIPVNL  SSADATLVGP  SPVVVINAHG  LPYLDRKLPV  AARVADLMKR360
MSLAEKVGQM  TQAERAAVGD  GTDITRYALG  SLLSGGGSVP  TPNTPAAWAD  MVDGYQTQAL420
STPLQIPLIY  GIDSVHGDNN  LSGATLFPHN  IGMGATRDPA  LARQEGVVTA  TETRATGIPW480
AFAPCVCVTR  DERWGRSYES  FGEDPSLVSQ  METVIDGLQG  NGNLAGKTSV  LATAKHFLGD540
GGTKYGSSTT  NDYKIDQGVT  YATPAQLNAL  YLAPFKTAVD  KGVGSVMPSY  SSLQILGQDT600
APIKMHARAD  LITGVLKNQL  GFKGFVISDY  AAIDQIGPDY  KSDVKIGINA  DLDMIMVPNN660
YATFISDLTA  LNASGDVSTA  RIDDAVARIL  TQKFALGLFD  HPMADRSNAS  TIGSAAHRAV720
ARRAVAESQV  LFKNSGNLLP  LAKNARIYVA  GSLADNVGNQ  SGGWTLTWQG  QSGEIPGGTS780
ILAGIRQVAP  HATVTYSATA  ATPTAGSTVG  IVAVGDTPYA  EGMGDVGVNG  HGLQLSVADR840
NAVDTVCGAM  RCVVLDVSGR  PLDLTGIVPE  ATAVVASWLP  GTEGAGVADV  LFGNRPFTGR900
LPVTWVKAES  QLPMNLGDKN  YDPLFPYGWG  LRTDPDRNRL  QVLRDQLERQ  SGAAGAVRSL960
DVVLSQRNWA  ADGSTRNADQ  LLDRLKSLAG  VMSDGRKFSF  VQQDVLVSVA  RDLAQRAIVD1020
GGSAAMSATA  SLTSGADHDI  AGGHPVQAIT  GLIKARMVAL  AVSP1064

Predicted 3D structure by AlphaFold2 with pLDDT = 90.91 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNRNRSRHYR  ALTGKLRRKV  AAISPAILVL  SLVTVAAAPP  AAAVSGPLPL  IENFEGSVPL60
GTGTPGLFGF  GSDAASIPKL  AVAAAADLPG  AVADNHALDV  PYTVGGYGGF  SYDLSAAQDW120
SPFGGFSFWV  EGTGSGQKVE  YEIKDGGADA  SHSELWQGFF  TDTAAGWHQV  LEPFAGLVRR180
GDYQPPGAPS  DGVLDLTSMW  GFAVNLPSGA  SGHLVFDEFS  LYGHSSAKFS  ATSSTYLVNA240
GQSASVGVKL  LLASGVLLTA  PVSVSYRLGG  GTAVTGTDFT  AASGAVTFPA  GSTALTVETI300
AVPTSAGTPA  GESKSIPVNL  SSADATLVGP  SPVVVINAHG  LPYLDRKLPV  AARVADLMKR360
MSLAEKVGQM  TQAERAAVGD  GTDITRYALG  SLLSGGGSVP  TPNTPAAWAD  MVDGYQTQAL420
STPLQIPLIY  GIDSVHGDNN  LSGATLFPHN  IGMGATRDPA  LARQEGVVTA  TETRATGIPW480
AFAPCVCVTR  DERWGRSYES  FGEDPSLVSQ  METVIDGLQG  NGNLAGKTSV  LATAKHFLGD540
GGTKYGSSTT  NDYKIDQGVT  YATPAQLNAL  YLAPFKTAVD  KGVGSVMPSY  SSLQILGQDT600
APIKMHARAD  LITGVLKNQL  GFKGFVISDY  AAIDQIGPDY  KSDVKIGINA  DLDMIMVPNN660
YATFISDLTA  LNASGDVSTA  RIDDAVARIL  TQKFALGLFD  HPMADRSNAS  TIGSAAHRAV720
ARRAVAESQV  LFKNSGNLLP  LAKNARIYVA  GSLADNVGNQ  SGGWTLTWQG  QSGEIPGGTS780
ILAGIRQVAP  HATVTYSATA  ATPTAGSTVG  IVAVGDTPYA  EGMGDVGVNG  HGLQLSVADR840
NAVDTVCGAM  RCVVLDVSGR  PLDLTGIVPE  ATAVVASWLP  GTEGAGVADV  LFGNRPFTGR900
LPVTWVKAES  QLPMNLGDKN  YDPLFPYGWG  LRTDPDRNRL  QVLRDQLERQ  SGAAGAVRSL960
DVVLSQRNWA  ADGSTRNADQ  LLDRLKSLAG  VMSDGRKFSF  VQQDVLVSVA  RDLAQRAIVD1020
GGSAAMSATA  SLTSGADHDI  AGGHPVQAIT  GLIKARMVAL  AVSP1064

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM11(65-223)+GH3(421-657)

MNRNRSRHYR  ALTGKLRRKV  AAISPAILVL  SLVTVAAAPP  AAAVSGPLPL  IENFEGSVPL60
GTGTPGLFGF  GSDAASIPKL  AVAAAADLPG  AVADNHALDV  PYTVGGYGGF  SYDLSAAQDW120
SPFGGFSFWV  EGTGSGQKVE  YEIKDGGADA  SHSELWQGFF  TDTAAGWHQV  LEPFAGLVRR180
GDYQPPGAPS  DGVLDLTSMW  GFAVNLPSGA  SGHLVFDEFS  LYGHSSAKFS  ATSSTYLVNA240
GQSASVGVKL  LLASGVLLTA  PVSVSYRLGG  GTAVTGTDFT  AASGAVTFPA  GSTALTVETI300
AVPTSAGTPA  GESKSIPVNL  SSADATLVGP  SPVVVINAHG  LPYLDRKLPV  AARVADLMKR360
MSLAEKVGQM  TQAERAAVGD  GTDITRYALG  SLLSGGGSVP  TPNTPAAWAD  MVDGYQTQAL420
STPLQIPLIY  GIDSVHGDNN  LSGATLFPHN  IGMGATRDPA  LARQEGVVTA  TETRATGIPW480
AFAPCVCVTR  DERWGRSYES  FGEDPSLVSQ  METVIDGLQG  NGNLAGKTSV  LATAKHFLGD540
GGTKYGSSTT  NDYKIDQGVT  YATPAQLNAL  YLAPFKTAVD  KGVGSVMPSY  SSLQILGQDT600
APIKMHARAD  LITGVLKNQL  GFKGFVISDY  AAIDQIGPDY  KSDVKIGINA  DLDMIMVPNN660
YATFISDLTA  LNASGDVSTA  RIDDAVARIL  TQKFALGLFD  HPMADRSNAS  TIGSAAHRAV720
ARRAVAESQV  LFKNSGNLLP  LAKNARIYVA  GSLADNVGNQ  SGGWTLTWQG  QSGEIPGGTS780
ILAGIRQVAP  HATVTYSATA  ATPTAGSTVG  IVAVGDTPYA  EGMGDVGVNG  HGLQLSVADR840
NAVDTVCGAM  RCVVLDVSGR  PLDLTGIVPE  ATAVVASWLP  GTEGAGVADV  LFGNRPFTGR900
LPVTWVKAES  QLPMNLGDKN  YDPLFPYGWG  LRTDPDRNRL  QVLRDQLERQ  SGAAGAVRSL960
DVVLSQRNWA  ADGSTRNADQ  LLDRLKSLAG  VMSDGRKFSF  VQQDVLVSVA  RDLAQRAIVD1020
GGSAAMSATA  SLTSGADHDI  AGGHPVQAIT  GLIKARMVAL  AVSP1064

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help