CAZyme3D

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Entry ID

Information for CAZyme ID: QNJ41798.1

Basic Information

GenBank IDQNJ41798.1
FamilyCBM35
Sequence Length359
UniProt IDA0A7G8KFG5(100,100)Download
Average pLDDT?63.54
CAZy50 ID127182
CAZy50 RepYes, QNJ41798.1
Structure ClusterSC_CBM35_clus40
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2763006
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces buecherae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTAGNNGSGV  PQDDDPFAYL  YRQEGGDGGA  GQGTQGSSRT  GGYGYPGPQQ  PGVPRTSYNH60
VRAVGERQYG  GQQQYGQQQY  GQQQQQPAPQ  QGGYGYPQHN  AHYTAPEALP  QQTRQRAHGA120
PSPGGVPPRQ  AAHGQGAPAG  YGGGHGGGAG  HGGGGRGPNS  KGLLIGAIAV  VVVVIIGISV180
AMISNSSGDK  DDKTEPTQNT  GPTAAETVEP  SQDPKPTKKP  EPLPTEDASA  MRLDGGTTLA240
SDIPGAKAEG  GKYVAGINKP  GAGATWTVDV  EKAGQYRLYV  GYGVPGEDQN  LSLTVNSKRD300
PRAVSMKNFA  LAKKGDWAKG  WTHTWAIVNL  NKGTNTVRLS  CEAGNKCDVN  LDQVWLARG359

Predicted 3D structure by AlphaFold2 with pLDDT = 63.54 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTAGNNGSGV  PQDDDPFAYL  YRQEGGDGGA  GQGTQGSSRT  GGYGYPGPQQ  PGVPRTSYNH60
VRAVGERQYG  GQQQYGQQQY  GQQQQQPAPQ  QGGYGYPQHN  AHYTAPEALP  QQTRQRAHGA120
PSPGGVPPRQ  AAHGQGAPAG  YGGGHGGGAG  HGGGGRGPNS  KGLLIGAIAV  VVVVIIGISV180
AMISNSSGDK  DDKTEPTQNT  GPTAAETVEP  SQDPKPTKKP  EPLPTEDASA  MRLDGGTTLA240
SDIPGAKAEG  GKYVAGINKP  GAGATWTVDV  EKAGQYRLYV  GYGVPGEDQN  LSLTVNSKRD300
PRAVSMKNFA  LAKKGDWAKG  WTHTWAIVNL  NKGTNTVRLS  CEAGNKCDVN  LDQVWLARG359

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(246-353)

MTAGNNGSGV  PQDDDPFAYL  YRQEGGDGGA  GQGTQGSSRT  GGYGYPGPQQ  PGVPRTSYNH60
VRAVGERQYG  GQQQYGQQQY  GQQQQQPAPQ  QGGYGYPQHN  AHYTAPEALP  QQTRQRAHGA120
PSPGGVPPRQ  AAHGQGAPAG  YGGGHGGGAG  HGGGGRGPNS  KGLLIGAIAV  VVVVIIGISV180
AMISNSSGDK  DDKTEPTQNT  GPTAAETVEP  SQDPKPTKKP  EPLPTEDASA  MRLDGGTTLA240
SDIPGAKAEG  GKYVAGINKP  GAGATWTVDV  EKAGQYRLYV  GYGVPGEDQN  LSLTVNSKRD300
PRAVSMKNFA  LAKKGDWAKG  WTHTWAIVNL  NKGTNTVRLS  CEAGNKCDVN  LDQVWLARG359

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help