CAZyme3D

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Entry ID

Information for CAZyme ID: QMW33909.1

Basic Information

GenBank IDQMW33909.1
FamilyCBM19, GH18
Sequence Length473
UniProt IDA0A7G5JE67(100,100)Download
Average pLDDT?80.49
CAZy50 ID74853
CAZy50 RepYes, QMW33909.1
Structure ClusterSC_CBM19_clus4, SC_GH18_clus115
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID332952
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderEurotiales
FamilyAspergillaceae
GenusAspergillus
SpeciesAspergillus flavus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSSSKTVALF  TLALASFKGA  LAALRLNSPN  NIAVYWGQNS  FGQSTGPYVQ  QRLSHYCRSK60
PDYTLSKEAA  ADDTTHVVYQ  ISFLTRINGA  GGVPEVNFAN  AGDNCTAFPG  TQLLDCPQIA120
EDIKECQSLG  RTILLSIGGA  TYNEGGFTNE  AAATAGAKMI  WETFGPVSNP  SVKRPFGDAV180
VDGFDFDFEA  TVNNMPAFAN  QLRSYYASDT  SKKYYTTAAP  QCPYPDAADG  PMLDGAVYFD240
AIWIQFYNNY  CGLQAFVPGS  AAQNNFNFDV  WDKWARETSL  NKNAKVFLGV  PGNQGAAGTG300
YQPISTVSEI  IKYVKQFSSF  GGVMVWDASQ  VYANTGFLSG  LRSALGGGGT  TPAPTTSPTT360
TPTTSLTTTS  KTTSPTPTTK  STSTSTTLTT  TTKSSTASPT  SSKPTASPTS  TVCPIAGQTC420
PTSGAFSCNG  SQFGICDNGR  WVMQQCPAGL  VCAQSGSGVY  CDYPGSTGVA  PCS473

Predicted 3D structure by AlphaFold2 with pLDDT = 80.49 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSSSKTVALF  TLALASFKGA  LAALRLNSPN  NIAVYWGQNS  FGQSTGPYVQ  QRLSHYCRSK60
PDYTLSKEAA  ADDTTHVVYQ  ISFLTRINGA  GGVPEVNFAN  AGDNCTAFPG  TQLLDCPQIA120
EDIKECQSLG  RTILLSIGGA  TYNEGGFTNE  AAATAGAKMI  WETFGPVSNP  SVKRPFGDAV180
VDGFDFDFEA  TVNNMPAFAN  QLRSYYASDT  SKKYYTTAAP  QCPYPDAADG  PMLDGAVYFD240
AIWIQFYNNY  CGLQAFVPGS  AAQNNFNFDV  WDKWARETSL  NKNAKVFLGV  PGNQGAAGTG300
YQPISTVSEI  IKYVKQFSSF  GGVMVWDASQ  VYANTGFLSG  LRSALGGGGT  TPAPTTSPTT360
TPTTSLTTTS  KTTSPTPTTK  STSTSTTLTT  TTKSSTASPT  SSKPTASPTS  TVCPIAGQTC420
PTSGAFSCNG  SQFGICDNGR  WVMQQCPAGL  VCAQSGSGVY  CDYPGSTGVA  PCS473

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(30-300)+CBM19(411-454)

MSSSKTVALF  TLALASFKGA  LAALRLNSPN  NIAVYWGQNS  FGQSTGPYVQ  QRLSHYCRSK60
PDYTLSKEAA  ADDTTHVVYQ  ISFLTRINGA  GGVPEVNFAN  AGDNCTAFPG  TQLLDCPQIA120
EDIKECQSLG  RTILLSIGGA  TYNEGGFTNE  AAATAGAKMI  WETFGPVSNP  SVKRPFGDAV180
VDGFDFDFEA  TVNNMPAFAN  QLRSYYASDT  SKKYYTTAAP  QCPYPDAADG  PMLDGAVYFD240
AIWIQFYNNY  CGLQAFVPGS  AAQNNFNFDV  WDKWARETSL  NKNAKVFLGV  PGNQGAAGTG300
YQPISTVSEI  IKYVKQFSSF  GGVMVWDASQ  VYANTGFLSG  LRSALGGGGT  TPAPTTSPTT360
TPTTSLTTTS  KTTSPTPTTK  STSTSTTLTT  TTKSSTASPT  SSKPTASPTS  TVCPIAGQTC420
PTSGAFSCNG  SQFGICDNGR  WVMQQCPAGL  VCAQSGSGVY  CDYPGSTGVA  PCS473

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help