CAZyme3D

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Entry ID

Information for CAZyme ID: QMV42548.1

Basic Information

GenBank IDQMV42548.1
FamilyCBM20, CBM25, GH119
Sequence Length1662
UniProt IDA0A7G5C014(100,100)Download
Average pLDDT?87.84
CAZy50 ID2829
CAZy50 RepYes, QMV42548.1
Structure ClusterSC_GH119_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2598458
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusCohnella
SpeciesCohnella cholangitidis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRIVGRKIIV  LLASFIFILA  FGASAAFAEI  SATHVYHNHM  PNFWAYYNTS  GYNSTAVGSP60
IRYTYDGQVI  ELKKNPPAGY  TYFNPKNGTA  LPHDDLVSYY  THNAKTGAYL  YWSWQVADSL120
NKSNPSGQVQ  VTMSAAVVNN  VNSFMTTNNV  PGYNNANWGL  PWKTAYNNLK  TPNGNRTLDV180
INFSGHHSMG  PLTGNDYLLK  DLIYQRTTLS  QSYFLGDSFT  ASKGFFPTEL  GFSERIIPVL240
DKLGIQWSVI  GNNHFSRTLT  DYPYLNDPGK  DTMVSPPNRA  DLQNTSTVGS  WVEQPMFNEK300
QVTYNKFPFA  STPHWVRYVD  PGTGKENRVV  GVPVAQAESW  EEGYQGSAKA  TVLKSFEGLL360
PQKQFFVIAH  DGDNSSGRAG  SEDTWRNAAN  VTYADSGVKA  EGISEYLVKN  TPAASDVVHV420
QDGSWIDTRD  SSSDPTWYHW  RLPFGIWKGQ  FSAFNTATGL  NLAPKKNLNG  VEDGMTVSFE480
YGYHYLERNF  ALLQAAENYA  KTAEQIWLDD  HPNYWQPTSA  LDKQVTYSGN  QLNPWMLSYP540
VKGDAANDYK  GGANPAELGW  YFLLPAMDSG  FGYYDENVDD  GVKPTLSFNN  SLYFTKPYVT600
SNKAKDKTGP  NVWWPQRYPY  NPGSANVSKA  EGWTLQYYDN  TFGIYTYAYD  VSGISDIKLK660
VRTHRDKTAS  ALDNTFRVYD  PAALKAQGVQ  NIDPAKVGSW  VEYPMNKRDL  KPDINGVAWQ720
PESTAMFKVV  PAQEIGDLYY  TYLSNYRDQM  LDYYIETVDN  AGNVTKSEIQ  TVYVGAGKYS780
KDASGKIVED  ANGTIQGTYP  FLVIDKEAPS  VPANLQAANT  TDRSVSLTWA  ASTDNVGVSA840
YEVYRDGVKV  GTASTAAYTD  AGLTASTSYV  YTVKALDKVG  NISLASSPLT  VMTKVPDNEP900
PAAPTDLTNG  AKTASTIQLS  WTAATDNYGV  LGYDIYRNGT  KVGNTDKTTY  TDSDLSPNTT960
YDYYAKAIDA  AGNASAASII  LSVKTESGNV  VTIYYKQGYT  TPYIHYRPIA  GTWTTSPGVL1020
MPQSDLTGYN  KITLNVGTAS  GAEVVFNNGS  GTWDNNGGKN  YTFQQGIWTF  ASGTITAGVP1080
TGIDTAAPTA  PTNLQATAKT  QTSVTLTWSA  STDNVGVTGY  EIYRNGVKVG  TSAATTYVNS1140
GLTAGTAYTF  TVKAYDAAGN  LSAAGTALEV  TTEPLDSVAP  TVPTNVQSTA  KTHNSITLSW1200
SASTDNVGVT  GYEIYRNSAK  VGTSATTTYV  DNNLAAATAY  TYMLKAYDAL  GNTSEASSEL1260
QVTTNAAPLS  NKATIYYKRG  YSTPYFHYAP  TGGAWTAVPG  IAMQASEFTG  YSVITVDIGT1320
ATSLAAVFNN  GGGTWDNNGG  KNYSFQQGIW  TFANGTITAG  PPEGSIVDTL  APTEPTNVQA1380
TAKTHDSVTL  SWSASTDNVG  VTGYEIYRNG  FKIGTSTQTT  FTDTGLTAQT  AYTYTVKAYD1440
AKANMSVASS  GLLVTTNAVP  LSNTATIYYK  QGFSSPYIYY  MPTGGAWTAL  PGVAMQPSAE1500
YAGYSVITVN  LGTATSMKAT  FNNGSGTWDN  NGGNNYTFEQ  GTWTFENGKI  TSGAPVLPQT1560
QSLTIKLTVP  MTTAANDSVY  IAGSFNNWNP  ADSNYKLTPN  SDGTYSITMS  LMAGTTIQYK1620
FLRGSWATVE  ANSNNSDIAN  RSYTMPNSAQ  TLTQTVVKWK  DK1662

Predicted 3D structure by AlphaFold2 with pLDDT = 87.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRIVGRKIIV  LLASFIFILA  FGASAAFAEI  SATHVYHNHM  PNFWAYYNTS  GYNSTAVGSP60
IRYTYDGQVI  ELKKNPPAGY  TYFNPKNGTA  LPHDDLVSYY  THNAKTGAYL  YWSWQVADSL120
NKSNPSGQVQ  VTMSAAVVNN  VNSFMTTNNV  PGYNNANWGL  PWKTAYNNLK  TPNGNRTLDV180
INFSGHHSMG  PLTGNDYLLK  DLIYQRTTLS  QSYFLGDSFT  ASKGFFPTEL  GFSERIIPVL240
DKLGIQWSVI  GNNHFSRTLT  DYPYLNDPGK  DTMVSPPNRA  DLQNTSTVGS  WVEQPMFNEK300
QVTYNKFPFA  STPHWVRYVD  PGTGKENRVV  GVPVAQAESW  EEGYQGSAKA  TVLKSFEGLL360
PQKQFFVIAH  DGDNSSGRAG  SEDTWRNAAN  VTYADSGVKA  EGISEYLVKN  TPAASDVVHV420
QDGSWIDTRD  SSSDPTWYHW  RLPFGIWKGQ  FSAFNTATGL  NLAPKKNLNG  VEDGMTVSFE480
YGYHYLERNF  ALLQAAENYA  KTAEQIWLDD  HPNYWQPTSA  LDKQVTYSGN  QLNPWMLSYP540
VKGDAANDYK  GGANPAELGW  YFLLPAMDSG  FGYYDENVDD  GVKPTLSFNN  SLYFTKPYVT600
SNKAKDKTGP  NVWWPQRYPY  NPGSANVSKA  EGWTLQYYDN  TFGIYTYAYD  VSGISDIKLK660
VRTHRDKTAS  ALDNTFRVYD  PAALKAQGVQ  NIDPAKVGSW  VEYPMNKRDL  KPDINGVAWQ720
PESTAMFKVV  PAQEIGDLYY  TYLSNYRDQM  LDYYIETVDN  AGNVTKSEIQ  TVYVGAGKYS780
KDASGKIVED  ANGTIQGTYP  FLVIDKEAPS  VPANLQAANT  TDRSVSLTWA  ASTDNVGVSA840
YEVYRDGVKV  GTASTAAYTD  AGLTASTSYV  YTVKALDKVG  NISLASSPLT  VMTKVPDNEP900
PAAPTDLTNG  AKTASTIQLS  WTAATDNYGV  LGYDIYRNGT  KVGNTDKTTY  TDSDLSPNTT960
YDYYAKAIDA  AGNASAASII  LSVKTESGNV  VTIYYKQGYT  TPYIHYRPIA  GTWTTSPGVL1020
MPQSDLTGYN  KITLNVGTAS  GAEVVFNNGS  GTWDNNGGKN  YTFQQGIWTF  ASGTITAGVP1080
TGIDTAAPTA  PTNLQATAKT  QTSVTLTWSA  STDNVGVTGY  EIYRNGVKVG  TSAATTYVNS1140
GLTAGTAYTF  TVKAYDAAGN  LSAAGTALEV  TTEPLDSVAP  TVPTNVQSTA  KTHNSITLSW1200
SASTDNVGVT  GYEIYRNSAK  VGTSATTTYV  DNNLAAATAY  TYMLKAYDAL  GNTSEASSEL1260
QVTTNAAPLS  NKATIYYKRG  YSTPYFHYAP  TGGAWTAVPG  IAMQASEFTG  YSVITVDIGT1320
ATSLAAVFNN  GGGTWDNNGG  KNYSFQQGIW  TFANGTITAG  PPEGSIVDTL  APTEPTNVQA1380
TAKTHDSVTL  SWSASTDNVG  VTGYEIYRNG  FKIGTSTQTT  FTDTGLTAQT  AYTYTVKAYD1440
AKANMSVASS  GLLVTTNAVP  LSNTATIYYK  QGFSSPYIYY  MPTGGAWTAL  PGVAMQPSAE1500
YAGYSVITVN  LGTATSMKAT  FNNGSGTWDN  NGGNNYTFEQ  GTWTFENGKI  TSGAPVLPQT1560
QSLTIKLTVP  MTTAANDSVY  IAGSFNNWNP  ADSNYKLTPN  SDGTYSITMS  LMAGTTIQYK1620
FLRGSWATVE  ANSNNSDIAN  RSYTMPNSAQ  TLTQTVVKWK  DK1662

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH119(7-894)

MRIVGRKIIV  LLASFIFILA  FGASAAFAEI  SATHVYHNHM  PNFWAYYNTS  GYNSTAVGSP60
IRYTYDGQVI  ELKKNPPAGY  TYFNPKNGTA  LPHDDLVSYY  THNAKTGAYL  YWSWQVADSL120
NKSNPSGQVQ  VTMSAAVVNN  VNSFMTTNNV  PGYNNANWGL  PWKTAYNNLK  TPNGNRTLDV180
INFSGHHSMG  PLTGNDYLLK  DLIYQRTTLS  QSYFLGDSFT  ASKGFFPTEL  GFSERIIPVL240
DKLGIQWSVI  GNNHFSRTLT  DYPYLNDPGK  DTMVSPPNRA  DLQNTSTVGS  WVEQPMFNEK300
QVTYNKFPFA  STPHWVRYVD  PGTGKENRVV  GVPVAQAESW  EEGYQGSAKA  TVLKSFEGLL360
PQKQFFVIAH  DGDNSSGRAG  SEDTWRNAAN  VTYADSGVKA  EGISEYLVKN  TPAASDVVHV420
QDGSWIDTRD  SSSDPTWYHW  RLPFGIWKGQ  FSAFNTATGL  NLAPKKNLNG  VEDGMTVSFE480
YGYHYLERNF  ALLQAAENYA  KTAEQIWLDD  HPNYWQPTSA  LDKQVTYSGN  QLNPWMLSYP540
VKGDAANDYK  GGANPAELGW  YFLLPAMDSG  FGYYDENVDD  GVKPTLSFNN  SLYFTKPYVT600
SNKAKDKTGP  NVWWPQRYPY  NPGSANVSKA  EGWTLQYYDN  TFGIYTYAYD  VSGISDIKLK660
VRTHRDKTAS  ALDNTFRVYD  PAALKAQGVQ  NIDPAKVGSW  VEYPMNKRDL  KPDINGVAWQ720
PESTAMFKVV  PAQEIGDLYY  TYLSNYRDQM  LDYYIETVDN  AGNVTKSEIQ  TVYVGAGKYS780
KDASGKIVED  ANGTIQGTYP  FLVIDKEAPS  VPANLQAANT  TDRSVSLTWA  ASTDNVGVSA840
YEVYRDGVKV  GTASTAAYTD  AGLTASTSYV  YTVKALDKVG  NISLASSPLT  VMTKVPDNEP900
PAAPTDLTNG  AKTASTIQLS  WTAATDNYGV  LGYDIYRNGT  KVGNTDKTTY  TDSDLSPNTT960
YDYYAKAIDA  AGNASAASII  LSVKTESGNV  VTIYYKQGYT  TPYIHYRPIA  GTWTTSPGVL1020
MPQSDLTGYN  KITLNVGTAS  GAEVVFNNGS  GTWDNNGGKN  YTFQQGIWTF  ASGTITAGVP1080
TGIDTAAPTA  PTNLQATAKT  QTSVTLTWSA  STDNVGVTGY  EIYRNGVKVG  TSAATTYVNS1140
GLTAGTAYTF  TVKAYDAAGN  LSAAGTALEV  TTEPLDSVAP  TVPTNVQSTA  KTHNSITLSW1200
SASTDNVGVT  GYEIYRNSAK  VGTSATTTYV  DNNLAAATAY  TYMLKAYDAL  GNTSEASSEL1260
QVTTNAAPLS  NKATIYYKRG  YSTPYFHYAP  TGGAWTAVPG  IAMQASEFTG  YSVITVDIGT1320
ATSLAAVFNN  GGGTWDNNGG  KNYSFQQGIW  TFANGTITAG  PPEGSIVDTL  APTEPTNVQA1380
TAKTHDSVTL  SWSASTDNVG  VTGYEIYRNG  FKIGTSTQTT  FTDTGLTAQT  AYTYTVKAYD1440
AKANMSVASS  GLLVTTNAVP  LSNTATIYYK  QGFSSPYIYY  MPTGGAWTAL  PGVAMQPSAE1500
YAGYSVITVN  LGTATSMKAT  FNNGSGTWDN  NGGNNYTFEQ  GTWTFENGKI  TSGAPVLPQT1560
QSLTIKLTVP  MTTAANDSVY  IAGSFNNWNP  ADSNYKLTPN  SDGTYSITMS  LMAGTTIQYK1620
FLRGSWATVE  ANSNNSDIAN  RSYTMPNSAQ  TLTQTVVKWK  DK1662

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help