Information for CAZyme ID: QMV42548.1
Basic Information
GenBank ID | QMV42548.1 |
Family | CBM20, CBM25, GH119 |
Sequence Length | 1662 |
UniProt ID | A0A7G5C014(100,100)![]() |
Average pLDDT? | 87.84 |
CAZy50 ID | 2829 |
CAZy50 Rep | Yes, QMV42548.1 |
Structure Cluster | SC_GH119_clus4 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2598458 |
Kingdom | Bacteria |
Phylum | Bacillota |
Class | Bacilli |
Order | Bacillales |
Family | Paenibacillaceae |
Genus | Cohnella |
Species | Cohnella cholangitidis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MRIVGRKIIV LLASFIFILA FGASAAFAEI SATHVYHNHM PNFWAYYNTS GYNSTAVGSP | 60 |
IRYTYDGQVI ELKKNPPAGY TYFNPKNGTA LPHDDLVSYY THNAKTGAYL YWSWQVADSL | 120 |
NKSNPSGQVQ VTMSAAVVNN VNSFMTTNNV PGYNNANWGL PWKTAYNNLK TPNGNRTLDV | 180 |
INFSGHHSMG PLTGNDYLLK DLIYQRTTLS QSYFLGDSFT ASKGFFPTEL GFSERIIPVL | 240 |
DKLGIQWSVI GNNHFSRTLT DYPYLNDPGK DTMVSPPNRA DLQNTSTVGS WVEQPMFNEK | 300 |
QVTYNKFPFA STPHWVRYVD PGTGKENRVV GVPVAQAESW EEGYQGSAKA TVLKSFEGLL | 360 |
PQKQFFVIAH DGDNSSGRAG SEDTWRNAAN VTYADSGVKA EGISEYLVKN TPAASDVVHV | 420 |
QDGSWIDTRD SSSDPTWYHW RLPFGIWKGQ FSAFNTATGL NLAPKKNLNG VEDGMTVSFE | 480 |
YGYHYLERNF ALLQAAENYA KTAEQIWLDD HPNYWQPTSA LDKQVTYSGN QLNPWMLSYP | 540 |
VKGDAANDYK GGANPAELGW YFLLPAMDSG FGYYDENVDD GVKPTLSFNN SLYFTKPYVT | 600 |
SNKAKDKTGP NVWWPQRYPY NPGSANVSKA EGWTLQYYDN TFGIYTYAYD VSGISDIKLK | 660 |
VRTHRDKTAS ALDNTFRVYD PAALKAQGVQ NIDPAKVGSW VEYPMNKRDL KPDINGVAWQ | 720 |
PESTAMFKVV PAQEIGDLYY TYLSNYRDQM LDYYIETVDN AGNVTKSEIQ TVYVGAGKYS | 780 |
KDASGKIVED ANGTIQGTYP FLVIDKEAPS VPANLQAANT TDRSVSLTWA ASTDNVGVSA | 840 |
YEVYRDGVKV GTASTAAYTD AGLTASTSYV YTVKALDKVG NISLASSPLT VMTKVPDNEP | 900 |
PAAPTDLTNG AKTASTIQLS WTAATDNYGV LGYDIYRNGT KVGNTDKTTY TDSDLSPNTT | 960 |
YDYYAKAIDA AGNASAASII LSVKTESGNV VTIYYKQGYT TPYIHYRPIA GTWTTSPGVL | 1020 |
MPQSDLTGYN KITLNVGTAS GAEVVFNNGS GTWDNNGGKN YTFQQGIWTF ASGTITAGVP | 1080 |
TGIDTAAPTA PTNLQATAKT QTSVTLTWSA STDNVGVTGY EIYRNGVKVG TSAATTYVNS | 1140 |
GLTAGTAYTF TVKAYDAAGN LSAAGTALEV TTEPLDSVAP TVPTNVQSTA KTHNSITLSW | 1200 |
SASTDNVGVT GYEIYRNSAK VGTSATTTYV DNNLAAATAY TYMLKAYDAL GNTSEASSEL | 1260 |
QVTTNAAPLS NKATIYYKRG YSTPYFHYAP TGGAWTAVPG IAMQASEFTG YSVITVDIGT | 1320 |
ATSLAAVFNN GGGTWDNNGG KNYSFQQGIW TFANGTITAG PPEGSIVDTL APTEPTNVQA | 1380 |
TAKTHDSVTL SWSASTDNVG VTGYEIYRNG FKIGTSTQTT FTDTGLTAQT AYTYTVKAYD | 1440 |
AKANMSVASS GLLVTTNAVP LSNTATIYYK QGFSSPYIYY MPTGGAWTAL PGVAMQPSAE | 1500 |
YAGYSVITVN LGTATSMKAT FNNGSGTWDN NGGNNYTFEQ GTWTFENGKI TSGAPVLPQT | 1560 |
QSLTIKLTVP MTTAANDSVY IAGSFNNWNP ADSNYKLTPN SDGTYSITMS LMAGTTIQYK | 1620 |
FLRGSWATVE ANSNNSDIAN RSYTMPNSAQ TLTQTVVKWK DK | 1662 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.84 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MRIVGRKIIV LLASFIFILA FGASAAFAEI SATHVYHNHM PNFWAYYNTS GYNSTAVGSP | 60 |
IRYTYDGQVI ELKKNPPAGY TYFNPKNGTA LPHDDLVSYY THNAKTGAYL YWSWQVADSL | 120 |
NKSNPSGQVQ VTMSAAVVNN VNSFMTTNNV PGYNNANWGL PWKTAYNNLK TPNGNRTLDV | 180 |
INFSGHHSMG PLTGNDYLLK DLIYQRTTLS QSYFLGDSFT ASKGFFPTEL GFSERIIPVL | 240 |
DKLGIQWSVI GNNHFSRTLT DYPYLNDPGK DTMVSPPNRA DLQNTSTVGS WVEQPMFNEK | 300 |
QVTYNKFPFA STPHWVRYVD PGTGKENRVV GVPVAQAESW EEGYQGSAKA TVLKSFEGLL | 360 |
PQKQFFVIAH DGDNSSGRAG SEDTWRNAAN VTYADSGVKA EGISEYLVKN TPAASDVVHV | 420 |
QDGSWIDTRD SSSDPTWYHW RLPFGIWKGQ FSAFNTATGL NLAPKKNLNG VEDGMTVSFE | 480 |
YGYHYLERNF ALLQAAENYA KTAEQIWLDD HPNYWQPTSA LDKQVTYSGN QLNPWMLSYP | 540 |
VKGDAANDYK GGANPAELGW YFLLPAMDSG FGYYDENVDD GVKPTLSFNN SLYFTKPYVT | 600 |
SNKAKDKTGP NVWWPQRYPY NPGSANVSKA EGWTLQYYDN TFGIYTYAYD VSGISDIKLK | 660 |
VRTHRDKTAS ALDNTFRVYD PAALKAQGVQ NIDPAKVGSW VEYPMNKRDL KPDINGVAWQ | 720 |
PESTAMFKVV PAQEIGDLYY TYLSNYRDQM LDYYIETVDN AGNVTKSEIQ TVYVGAGKYS | 780 |
KDASGKIVED ANGTIQGTYP FLVIDKEAPS VPANLQAANT TDRSVSLTWA ASTDNVGVSA | 840 |
YEVYRDGVKV GTASTAAYTD AGLTASTSYV YTVKALDKVG NISLASSPLT VMTKVPDNEP | 900 |
PAAPTDLTNG AKTASTIQLS WTAATDNYGV LGYDIYRNGT KVGNTDKTTY TDSDLSPNTT | 960 |
YDYYAKAIDA AGNASAASII LSVKTESGNV VTIYYKQGYT TPYIHYRPIA GTWTTSPGVL | 1020 |
MPQSDLTGYN KITLNVGTAS GAEVVFNNGS GTWDNNGGKN YTFQQGIWTF ASGTITAGVP | 1080 |
TGIDTAAPTA PTNLQATAKT QTSVTLTWSA STDNVGVTGY EIYRNGVKVG TSAATTYVNS | 1140 |
GLTAGTAYTF TVKAYDAAGN LSAAGTALEV TTEPLDSVAP TVPTNVQSTA KTHNSITLSW | 1200 |
SASTDNVGVT GYEIYRNSAK VGTSATTTYV DNNLAAATAY TYMLKAYDAL GNTSEASSEL | 1260 |
QVTTNAAPLS NKATIYYKRG YSTPYFHYAP TGGAWTAVPG IAMQASEFTG YSVITVDIGT | 1320 |
ATSLAAVFNN GGGTWDNNGG KNYSFQQGIW TFANGTITAG PPEGSIVDTL APTEPTNVQA | 1380 |
TAKTHDSVTL SWSASTDNVG VTGYEIYRNG FKIGTSTQTT FTDTGLTAQT AYTYTVKAYD | 1440 |
AKANMSVASS GLLVTTNAVP LSNTATIYYK QGFSSPYIYY MPTGGAWTAL PGVAMQPSAE | 1500 |
YAGYSVITVN LGTATSMKAT FNNGSGTWDN NGGNNYTFEQ GTWTFENGKI TSGAPVLPQT | 1560 |
QSLTIKLTVP MTTAANDSVY IAGSFNNWNP ADSNYKLTPN SDGTYSITMS LMAGTTIQYK | 1620 |
FLRGSWATVE ANSNNSDIAN RSYTMPNSAQ TLTQTVVKWK DK | 1662 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.