CAZyme3D

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Entry ID

Information for CAZyme ID: QMT39158.1

Basic Information

GenBank IDQMT39158.1
FamilyGH23
Sequence Length226
UniProt IDC6M7C1(100,100)Download
Average pLDDT?75.92
CAZy50 ID176790
CAZy50 RepYes, QMT39158.1
Structure ClusterSC_GH23_clus128
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID490
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNeisseriales
FamilyNeisseriaceae
GenusNeisseria
SpeciesNeisseria sicca

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKMLKLTAS  LFVICHSSAF  AAAPYPQYEA  LVEKHAALQR  LDKNIVWAVM  GRESSGNRYA60
LSNKNARGLL  QVIPPTAARM  GVNPKYLYDP  EQNIIAGTRY  LRFLCNHFPD  RSSIHGCNLD120
LVLAGYNAGE  GAVRKYGGIP  PYRETKLYVR  NVKARYARLS  GKNPAAIQPV  PVTVANKKIS180
DSPYRQAVFS  ERTNFSDIPV  RIERGIHQQV  VLQKPEPKSW  DVFGDF226

Predicted 3D structure by AlphaFold2 with pLDDT = 75.92 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKMLKLTAS  LFVICHSSAF  AAAPYPQYEA  LVEKHAALQR  LDKNIVWAVM  GRESSGNRYA60
LSNKNARGLL  QVIPPTAARM  GVNPKYLYDP  EQNIIAGTRY  LRFLCNHFPD  RSSIHGCNLD120
LVLAGYNAGE  GAVRKYGGIP  PYRETKLYVR  NVKARYARLS  GKNPAAIQPV  PVTVANKKIS180
DSPYRQAVFS  ERTNFSDIPV  RIERGIHQQV  VLQKPEPKSW  DVFGDF226

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(44-161)

MKKMLKLTAS  LFVICHSSAF  AAAPYPQYEA  LVEKHAALQR  LDKNIVWAVM  GRESSGNRYA60
LSNKNARGLL  QVIPPTAARM  GVNPKYLYDP  EQNIIAGTRY  LRFLCNHFPD  RSSIHGCNLD120
LVLAGYNAGE  GAVRKYGGIP  PYRETKLYVR  NVKARYARLS  GKNPAAIQPV  PVTVANKKIS180
DSPYRQAVFS  ERTNFSDIPV  RIERGIHQQV  VLQKPEPKSW  DVFGDF226

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help