CAZyme3D

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Entry ID

Information for CAZyme ID: QLH04016.1

Basic Information

GenBank IDQLH04016.1
FamilyGT4
Sequence Length364
UniProt IDA0A7D5QYN0(100,100)Download
Average pLDDT?94.26
CAZy50 ID123875
CAZy50 RepYes, QLH04016.1
Structure ClusterSC_GT4_clus390
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1959104
KingdomArchaea
PhylumNitrososphaerota
ClassNitrososphaeria
OrderNitrosopumilales
FamilyNitrosopumilaceae
GenusNitrosopumilus
SpeciesNitrosopumilus oxyclinae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKILIAGNLV  NHGYFLTKLL  RENGISAELL  FRKKPEISED  PLKFDPDLKE  YPNWVKTWDG60
SNKNWKWNVI  NIMRKYDLIQ  ASTELPIFSM  FSRKPYIVFA  TGSDIIELAH  QNNLKAFLLR120
RAYKKAKLII  VPGLYMYPSV  KKLKLKKTIF  LPLLWDYNKY  KLENNLIKSN  NKFTIFHPTR180
HDWLVKGNDK  FLNAFVRFAK  ERNNVQLIII  NHGKDYQKSI  NIIENVKEKV  KILPNRLGQN240
EMLQYYHQSD  VVVDYFNLGS  TGMIGQEAMA  CEKPLIQYVN  TLLYEEYYKE  IPPIVNANTE300
DEVYQALSKL  ADDPKLCEKI  GKDSRKWLLK  HHDPQKIIKK  YIYLYDSVLN  KVKFEIIKEK360
INSI364

Predicted 3D structure by AlphaFold2 with pLDDT = 94.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKILIAGNLV  NHGYFLTKLL  RENGISAELL  FRKKPEISED  PLKFDPDLKE  YPNWVKTWDG60
SNKNWKWNVI  NIMRKYDLIQ  ASTELPIFSM  FSRKPYIVFA  TGSDIIELAH  QNNLKAFLLR120
RAYKKAKLII  VPGLYMYPSV  KKLKLKKTIF  LPLLWDYNKY  KLENNLIKSN  NKFTIFHPTR180
HDWLVKGNDK  FLNAFVRFAK  ERNNVQLIII  NHGKDYQKSI  NIIENVKEKV  KILPNRLGQN240
EMLQYYHQSD  VVVDYFNLGS  TGMIGQEAMA  CEKPLIQYVN  TLLYEEYYKE  IPPIVNANTE300
DEVYQALSKL  ADDPKLCEKI  GKDSRKWLLK  HHDPQKIIKK  YIYLYDSVLN  KVKFEIIKEK360
INSI364

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(171-321)

MKILIAGNLV  NHGYFLTKLL  RENGISAELL  FRKKPEISED  PLKFDPDLKE  YPNWVKTWDG60
SNKNWKWNVI  NIMRKYDLIQ  ASTELPIFSM  FSRKPYIVFA  TGSDIIELAH  QNNLKAFLLR120
RAYKKAKLII  VPGLYMYPSV  KKLKLKKTIF  LPLLWDYNKY  KLENNLIKSN  NKFTIFHPTR180
HDWLVKGNDK  FLNAFVRFAK  ERNNVQLIII  NHGKDYQKSI  NIIENVKEKV  KILPNRLGQN240
EMLQYYHQSD  VVVDYFNLGS  TGMIGQEAMA  CEKPLIQYVN  TLLYEEYYKE  IPPIVNANTE300
DEVYQALSKL  ADDPKLCEKI  GKDSRKWLLK  HHDPQKIIKK  YIYLYDSVLN  KVKFEIIKEK360
INSI364

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help