Information for CAZyme ID: QLE87320.1
Basic Information
| GenBank ID | QLE87320.1 |
| Family | CBM5 |
| Sequence Length | 699 |
| UniProt ID | QLE87320.1(MOD) |
| Average pLDDT? | 86.28 |
| CAZy50 ID | 38774 |
| CAZy50 Rep | Yes, QLE87320.1 |
| Structure Cluster | SC_CBM5_clus12, SC_CBM5_clus30 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2589987 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Shewanellaceae |
| Genus | Shewanella |
| Species | Shewanella sp. Scap07 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKTINKQTLP LAAAFTLSLV AAAVNAQTQS MAEPAVVDNQ AQRFIVQLTD RSVLSLQQGK | 60 |
| SSAAVVTQAK VDLMQRTAAT VSADVVLSLP QINAMAVMLD SEQYQALSAD PNVALVEVDP | 120 |
| KRYLMAESSP YGISMVQANL VSDSQTANRK VCITDTGYDL GHVDLPNAGV TGDDGYGSNN | 180 |
| TGNWYNDGNG HGTHVAGTIA AIGGNNQGVV GVNPSGLIGL HIVKVFNDSG NWAYGSDMVA | 240 |
| AVNQCVAAGA DVISMSLGGG AASSAERQAF ANAASQGVLS IAAAGNDGNS TLSYPASYDE | 300 |
| VMSVAAVDST GTKASFSQYN SQVEIAAPGV NVNSTWNDGG YKSISGTSMA TPHVAGVAAL | 360 |
| VWSHFPSCSP AEIRNALNAT AEDKGSAGRD TSYGYGIVKA KAAYDYLQNS SCGGGGGLDQ | 420 |
| PPVANFNVAV NGSTVSFSNA SSDDKGISSY YWDFGDQTSS TQASPVHTYS SNGDFTVQLT | 480 |
| VTDTANQTNT KSATVSIGSG GGEGCDGIGA WDAGTSYAIG DLVAYSSSKY EATWWSTGAR | 540 |
| PDVYSNVWAN RGECSGGGNP NQPPVANFSA SASGLTVSFT SQATDDSAVA SHAWQFGDGG | 600 |
| VSNQTNPVHT FGASGSYQVS LTVEDAEGLS HTQVQTIAVA DGVQGCSGLT TWSAGAIYNT | 660 |
| GDQVAHNGVK YTANWWTQNQ NPADNSGQWA VWTNNGSCN | 699 |
Predicted 3D structure by AlphaFold2 with pLDDT = 86.28 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MKTINKQTLP LAAAFTLSLV AAAVNAQTQS MAEPAVVDNQ AQRFIVQLTD RSVLSLQQGK | 60 |
| SSAAVVTQAK VDLMQRTAAT VSADVVLSLP QINAMAVMLD SEQYQALSAD PNVALVEVDP | 120 |
| KRYLMAESSP YGISMVQANL VSDSQTANRK VCITDTGYDL GHVDLPNAGV TGDDGYGSNN | 180 |
| TGNWYNDGNG HGTHVAGTIA AIGGNNQGVV GVNPSGLIGL HIVKVFNDSG NWAYGSDMVA | 240 |
| AVNQCVAAGA DVISMSLGGG AASSAERQAF ANAASQGVLS IAAAGNDGNS TLSYPASYDE | 300 |
| VMSVAAVDST GTKASFSQYN SQVEIAAPGV NVNSTWNDGG YKSISGTSMA TPHVAGVAAL | 360 |
| VWSHFPSCSP AEIRNALNAT AEDKGSAGRD TSYGYGIVKA KAAYDYLQNS SCGGGGGLDQ | 420 |
| PPVANFNVAV NGSTVSFSNA SSDDKGISSY YWDFGDQTSS TQASPVHTYS SNGDFTVQLT | 480 |
| VTDTANQTNT KSATVSIGSG GGEGCDGIGA WDAGTSYAIG DLVAYSSSKY EATWWSTGAR | 540 |
| PDVYSNVWAN RGECSGGGNP NQPPVANFSA SASGLTVSFT SQATDDSAVA SHAWQFGDGG | 600 |
| VSNQTNPVHT FGASGSYQVS LTVEDAEGLS HTQVQTIAVA DGVQGCSGLT TWSAGAIYNT | 660 |
| GDQVAHNGVK YTANWWTQNQ NPADNSGQWA VWTNNGSCN | 699 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.