CAZyme3D

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Entry ID

Information for CAZyme ID: QLA19909.1

Basic Information

GenBank IDQLA19909.1
FamilyGT9
Sequence Length427
UniProt IDQLA19909.1(MOD)Download
Average pLDDT?91.18
CAZy50 ID86591
CAZy50 RepYes, QLA19909.1
Structure ClusterSC_GT9_clus58
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2773299
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfolutivibrio
SpeciesDesulfolutivibrio sulfoxidireducens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRVLVVQLA  RFGDLLQTRR  LLASLAARDM  SSAAPELHLL  VDASLLPLAG  LAYPGVIAHG60
LAAHGPGNAA  GADDPSALAR  VLGNRATFAE  LSALRFDRVY  VLNHSGLARA  VSTLFDPDIV120
RGHLLTHGQP  VKDPWPALAF  RFMATRRETG  LNLMDFWAAF  AGRMAPPDTV  NPRATPKGGG180
IGVVLAGREA  RRSLPPQVLA  PLLTAAFSRV  AAKRIVLLGT  ADQAPAARAL  CRLLRPAVAE240
HVLDLSGKTD  MGGLFREIAA  LDELFTPDTG  AMHLAAHLGT  PVTAFFLSSA  WCHETGPYGH300
GHTVWQALTP  CAPCLETAAC  EHGLVCRDPF  ADARLARLVA  GSAKTAPPPG  LVGYHTGTDA360
LGAVCEPFAG  EDQTAPARRA  FRAFVAEHLG  VGHGLGADPG  LGARYYQEPD  WMLDRGPLAG420
RGFVETL427

Predicted 3D structure by AlphaFold2 with pLDDT = 91.18 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKRVLVVQLA  RFGDLLQTRR  LLASLAARDM  SSAAPELHLL  VDASLLPLAG  LAYPGVIAHG60
LAAHGPGNAA  GADDPSALAR  VLGNRATFAE  LSALRFDRVY  VLNHSGLARA  VSTLFDPDIV120
RGHLLTHGQP  VKDPWPALAF  RFMATRRETG  LNLMDFWAAF  AGRMAPPDTV  NPRATPKGGG180
IGVVLAGREA  RRSLPPQVLA  PLLTAAFSRV  AAKRIVLLGT  ADQAPAARAL  CRLLRPAVAE240
HVLDLSGKTD  MGGLFREIAA  LDELFTPDTG  AMHLAAHLGT  PVTAFFLSSA  WCHETGPYGH300
GHTVWQALTP  CAPCLETAAC  EHGLVCRDPF  ADARLARLVA  GSAKTAPPPG  LVGYHTGTDA360
LGAVCEPFAG  EDQTAPARRA  FRAFVAEHLG  VGHGLGADPG  LGARYYQEPD  WMLDRGPLAG420
RGFVETL427

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT9(86-319)

MKRVLVVQLA  RFGDLLQTRR  LLASLAARDM  SSAAPELHLL  VDASLLPLAG  LAYPGVIAHG60
LAAHGPGNAA  GADDPSALAR  VLGNRATFAE  LSALRFDRVY  VLNHSGLARA  VSTLFDPDIV120
RGHLLTHGQP  VKDPWPALAF  RFMATRRETG  LNLMDFWAAF  AGRMAPPDTV  NPRATPKGGG180
IGVVLAGREA  RRSLPPQVLA  PLLTAAFSRV  AAKRIVLLGT  ADQAPAARAL  CRLLRPAVAE240
HVLDLSGKTD  MGGLFREIAA  LDELFTPDTG  AMHLAAHLGT  PVTAFFLSSA  WCHETGPYGH300
GHTVWQALTP  CAPCLETAAC  EHGLVCRDPF  ADARLARLVA  GSAKTAPPPG  LVGYHTGTDA360
LGAVCEPFAG  EDQTAPARRA  FRAFVAEHLG  VGHGLGADPG  LGARYYQEPD  WMLDRGPLAG420
RGFVETL427

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help