CAZyme3D

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Entry ID

Information for CAZyme ID: QLA17684.1

Basic Information

GenBank IDQLA17684.1
FamilyGT2
Sequence Length764
UniProt IDQLA17684.1(MOD)Download
Average pLDDT?84.52
CAZy50 ID31219
CAZy50 RepYes, QLA17684.1
Structure ClusterSC_GT2_clus700
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2773299
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusDesulfolutivibrio
SpeciesDesulfolutivibrio sulfoxidireducens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIEARAVSPA  LTAPGSQNAR  SHAPGIGLAR  KARFFRTHSG  WPPPPTGEKP  IGMPQRIPAL60
TRRPARLTIR  PVSQVEPGGE  PTLWRSLGER  PWLECVPPGG  QIPEGWVHLQ  GRLLRKSGSW120
AAFAHAETAG  DSDAVATFEL  PVSFKGTINE  LLLLPEGVTR  LFLEPMQGPG  EFELGEFTLK180
PVGTVERYRR  MYKRILAMYY  KHPRRRRKMA  GLHSRTVLGN  LTDAYGIAGR  LRCHTPSLPY240
DRWLASFDQL  TDRDIAAISR  DISRLRRPPR  FVILLPRGDR  DDPARRATMD  SLARQLYPHY300
EVVSPDAWRS  DGHPDTWFVL  ATPGMLLRPH  ALYWIARAAR  DNRRWRLIYA  DHDFLDHDGQ360
RCDPVFKPDW  SPELLRSTNY  IGHAAAIRGD  VLKSMDRPAD  AEWDIHGLLL  RAGELIPRYA420
VGHVHAPLFH  LPRTCLEHGG  TAGNPAQVAA  HLARSGVRAK  VEPTRRGHCR  IRYALPEKPP480
LVSIIIPTRD  GLPVLRTCVE  SVLEKTAYRA  FEIRIVDNQS  REPETLDYFA  ALRGHPRVRV540
MPYPHPFNFS  AINNHAAWNC  DGTVLCLLNN  DTEVIAPDWL  EEMLGHLVQP  GVGVVGAKLY600
YTDGRVQHAG  DVVGPGGCAN  HLHPCIAGDD  PGYCDRAILA  QDLSAVTAAC  MLTWKDVYTR660
LGGFDAMHLP  VAFNDVDYCL  RVRQAGMRVI  WTPYAELYHH  ESYSRGSDTV  SPERQAQARA720
EVKFMRSRWK  RVMRHDPFYN  PNLNYARPDF  TLNVAPLVDK  PWMR764

Predicted 3D structure by AlphaFold2 with pLDDT = 84.52 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIEARAVSPA  LTAPGSQNAR  SHAPGIGLAR  KARFFRTHSG  WPPPPTGEKP  IGMPQRIPAL60
TRRPARLTIR  PVSQVEPGGE  PTLWRSLGER  PWLECVPPGG  QIPEGWVHLQ  GRLLRKSGSW120
AAFAHAETAG  DSDAVATFEL  PVSFKGTINE  LLLLPEGVTR  LFLEPMQGPG  EFELGEFTLK180
PVGTVERYRR  MYKRILAMYY  KHPRRRRKMA  GLHSRTVLGN  LTDAYGIAGR  LRCHTPSLPY240
DRWLASFDQL  TDRDIAAISR  DISRLRRPPR  FVILLPRGDR  DDPARRATMD  SLARQLYPHY300
EVVSPDAWRS  DGHPDTWFVL  ATPGMLLRPH  ALYWIARAAR  DNRRWRLIYA  DHDFLDHDGQ360
RCDPVFKPDW  SPELLRSTNY  IGHAAAIRGD  VLKSMDRPAD  AEWDIHGLLL  RAGELIPRYA420
VGHVHAPLFH  LPRTCLEHGG  TAGNPAQVAA  HLARSGVRAK  VEPTRRGHCR  IRYALPEKPP480
LVSIIIPTRD  GLPVLRTCVE  SVLEKTAYRA  FEIRIVDNQS  REPETLDYFA  ALRGHPRVRV540
MPYPHPFNFS  AINNHAAWNC  DGTVLCLLNN  DTEVIAPDWL  EEMLGHLVQP  GVGVVGAKLY600
YTDGRVQHAG  DVVGPGGCAN  HLHPCIAGDD  PGYCDRAILA  QDLSAVTAAC  MLTWKDVYTR660
LGGFDAMHLP  VAFNDVDYCL  RVRQAGMRVI  WTPYAELYHH  ESYSRGSDTV  SPERQAQARA720
EVKFMRSRWK  RVMRHDPFYN  PNLNYARPDF  TLNVAPLVDK  PWMR764

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(483-606)

MIEARAVSPA  LTAPGSQNAR  SHAPGIGLAR  KARFFRTHSG  WPPPPTGEKP  IGMPQRIPAL60
TRRPARLTIR  PVSQVEPGGE  PTLWRSLGER  PWLECVPPGG  QIPEGWVHLQ  GRLLRKSGSW120
AAFAHAETAG  DSDAVATFEL  PVSFKGTINE  LLLLPEGVTR  LFLEPMQGPG  EFELGEFTLK180
PVGTVERYRR  MYKRILAMYY  KHPRRRRKMA  GLHSRTVLGN  LTDAYGIAGR  LRCHTPSLPY240
DRWLASFDQL  TDRDIAAISR  DISRLRRPPR  FVILLPRGDR  DDPARRATMD  SLARQLYPHY300
EVVSPDAWRS  DGHPDTWFVL  ATPGMLLRPH  ALYWIARAAR  DNRRWRLIYA  DHDFLDHDGQ360
RCDPVFKPDW  SPELLRSTNY  IGHAAAIRGD  VLKSMDRPAD  AEWDIHGLLL  RAGELIPRYA420
VGHVHAPLFH  LPRTCLEHGG  TAGNPAQVAA  HLARSGVRAK  VEPTRRGHCR  IRYALPEKPP480
LVSIIIPTRD  GLPVLRTCVE  SVLEKTAYRA  FEIRIVDNQS  REPETLDYFA  ALRGHPRVRV540
MPYPHPFNFS  AINNHAAWNC  DGTVLCLLNN  DTEVIAPDWL  EEMLGHLVQP  GVGVVGAKLY600
YTDGRVQHAG  DVVGPGGCAN  HLHPCIAGDD  PGYCDRAILA  QDLSAVTAAC  MLTWKDVYTR660
LGGFDAMHLP  VAFNDVDYCL  RVRQAGMRVI  WTPYAELYHH  ESYSRGSDTV  SPERQAQARA720
EVKFMRSRWK  RVMRHDPFYN  PNLNYARPDF  TLNVAPLVDK  PWMR764

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help