CAZyme3D

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Entry ID

Information for CAZyme ID: QKX63442.1

Basic Information

GenBank IDQKX63442.1
FamilyGH17
Sequence Length743
UniProt IDA0A7H8RAL6(100,100)Download
Average pLDDT?63.07
CAZy50 ID33563
CAZy50 RepYes, QKX63442.1
Structure ClusterSC_GH17_clus40
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID121627
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderEurotiales
FamilyTrichocomaceae
GenusTalaromyces
SpeciesTalaromyces rugulosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSRRPRSSSS  GRDVSPVDVH  NARRTSSQVS  PVSEQSMHFE  QSVSRAFYPG  SHPDSAYARL60
SSQRFGNIDS  ANQNQIHPPS  PPRHVHQHMP  PRITHSNSLR  TNATATPGVD  NLGAAAVGGG120
ISGIAFGVAN  RNERQSGVEA  MRPVDERGQQ  EQQHYYDGPS  ERHYTDTPYV  PPVPYSDQPA180
ADPRLARDSY  HGNSNSYSAS  HLPLGGGAAL  AAAGTPAHGS  PSMSTSNPSQ  LSVGEPYPRY240
PSGGLYDGPY  HSYHNNPASI  NPDEIADDGD  DGFINVPQRR  SGLFGKKSSQ  EAVAGGAAAG300
AATGGVLGAM  NNLRGGGSTV  YGPVPHSEGG  HAEKNPALTQ  HAADAAAAKR  RKRWMLTLLV360
GIGIIAVIVG  AIVGGILGSR  KHGSSSSNSD  GDSSGDGSDD  PGTNTQTAEG  DIKTNGLLDK420
NSPEIQKLMN  NDNLHRVFHG  MDYTSWGVQY  PLCEKYPPSP  NNVTRDMAVL  SQLTDTVRVY480
GTDCNQTQMV  LAAIDRLELT  DMKLWLGVWV  DSNETTVNRQ  MDILYDVIDD  MNDTSILQGV540
IVGNEVLYNG  GFEVKATAQE  KLTTYLNNVR  SNLTSKGLKI  PVATSDLGDN  WTADLLEASD600
LVMANVHPFF  GGVQVDKAAA  WTTTFFDTHD  VSLTSGTKKE  AIISEVGWPS  DGGNDCGTNN660
CTDTTSGSVA  GIDEMNQFMA  DWVCQALNNG  TKYFWFEAFD  EPWKVKYNTP  GKSWEEKWGL720
LDAGRNIKSG  LKIPDCDGKT  VSS743

Predicted 3D structure by AlphaFold2 with pLDDT = 63.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSRRPRSSSS  GRDVSPVDVH  NARRTSSQVS  PVSEQSMHFE  QSVSRAFYPG  SHPDSAYARL60
SSQRFGNIDS  ANQNQIHPPS  PPRHVHQHMP  PRITHSNSLR  TNATATPGVD  NLGAAAVGGG120
ISGIAFGVAN  RNERQSGVEA  MRPVDERGQQ  EQQHYYDGPS  ERHYTDTPYV  PPVPYSDQPA180
ADPRLARDSY  HGNSNSYSAS  HLPLGGGAAL  AAAGTPAHGS  PSMSTSNPSQ  LSVGEPYPRY240
PSGGLYDGPY  HSYHNNPASI  NPDEIADDGD  DGFINVPQRR  SGLFGKKSSQ  EAVAGGAAAG300
AATGGVLGAM  NNLRGGGSTV  YGPVPHSEGG  HAEKNPALTQ  HAADAAAAKR  RKRWMLTLLV360
GIGIIAVIVG  AIVGGILGSR  KHGSSSSNSD  GDSSGDGSDD  PGTNTQTAEG  DIKTNGLLDK420
NSPEIQKLMN  NDNLHRVFHG  MDYTSWGVQY  PLCEKYPPSP  NNVTRDMAVL  SQLTDTVRVY480
GTDCNQTQMV  LAAIDRLELT  DMKLWLGVWV  DSNETTVNRQ  MDILYDVIDD  MNDTSILQGV540
IVGNEVLYNG  GFEVKATAQE  KLTTYLNNVR  SNLTSKGLKI  PVATSDLGDN  WTADLLEASD600
LVMANVHPFF  GGVQVDKAAA  WTTTFFDTHD  VSLTSGTKKE  AIISEVGWPS  DGGNDCGTNN660
CTDTTSGSVA  GIDEMNQFMA  DWVCQALNNG  TKYFWFEAFD  EPWKVKYNTP  GKSWEEKWGL720
LDAGRNIKSG  LKIPDCDGKT  VSS743

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(448-728)

MSRRPRSSSS  GRDVSPVDVH  NARRTSSQVS  PVSEQSMHFE  QSVSRAFYPG  SHPDSAYARL60
SSQRFGNIDS  ANQNQIHPPS  PPRHVHQHMP  PRITHSNSLR  TNATATPGVD  NLGAAAVGGG120
ISGIAFGVAN  RNERQSGVEA  MRPVDERGQQ  EQQHYYDGPS  ERHYTDTPYV  PPVPYSDQPA180
ADPRLARDSY  HGNSNSYSAS  HLPLGGGAAL  AAAGTPAHGS  PSMSTSNPSQ  LSVGEPYPRY240
PSGGLYDGPY  HSYHNNPASI  NPDEIADDGD  DGFINVPQRR  SGLFGKKSSQ  EAVAGGAAAG300
AATGGVLGAM  NNLRGGGSTV  YGPVPHSEGG  HAEKNPALTQ  HAADAAAAKR  RKRWMLTLLV360
GIGIIAVIVG  AIVGGILGSR  KHGSSSSNSD  GDSSGDGSDD  PGTNTQTAEG  DIKTNGLLDK420
NSPEIQKLMN  NDNLHRVFHG  MDYTSWGVQY  PLCEKYPPSP  NNVTRDMAVL  SQLTDTVRVY480
GTDCNQTQMV  LAAIDRLELT  DMKLWLGVWV  DSNETTVNRQ  MDILYDVIDD  MNDTSILQGV540
IVGNEVLYNG  GFEVKATAQE  KLTTYLNNVR  SNLTSKGLKI  PVATSDLGDN  WTADLLEASD600
LVMANVHPFF  GGVQVDKAAA  WTTTFFDTHD  VSLTSGTKKE  AIISEVGWPS  DGGNDCGTNN660
CTDTTSGSVA  GIDEMNQFMA  DWVCQALNNG  TKYFWFEAFD  EPWKVKYNTP  GKSWEEKWGL720
LDAGRNIKSG  LKIPDCDGKT  VSS743

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help