CAZyme3D

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Entry ID

Information for CAZyme ID: QKX53550.1

Basic Information

GenBank IDQKX53550.1
FamilyCBM18, GH16_19
Sequence Length457
UniProt IDA0A7H8QI16(100,100)Download
Average pLDDT?78.10
CAZy50 ID78318
CAZy50 RepYes, QKX53550.1
Structure ClusterSC_GH16_clus245
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID121627
KingdomEukaryota
PhylumAscomycota
ClassEurotiomycetes
OrderEurotiales
FamilyTrichocomaceae
GenusTalaromyces
SpeciesTalaromyces rugulosus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVRFAAAFVA  ALTASVAAAA  SSTTCGSGTK  CPSDKPCCSQ  YGECGTGAYC  LGGCDPINSN60
SLDACTPEPV  CESKTFNDWS  NLAGVESNDK  YLGNATESDW  VSSGKPLVHN  GELLLTMAKG120
SVGTLLAYNH  YIWYGKVSAK  LKTSRTAGVV  TAFILLSDVK  DEIDYEFVGT  ELTTAQTNFY180
FQGILDWENS  VNATTTDTFE  NYHTYEIDWT  PDDITWSLDG  KSVRVLKKAD  TYNETTQQYK240
FPQTPSRLQL  SLWPAGLSTN  APGTIAWAGG  EISWDTADIK  DPGYYYATFA  EVSVTCYDPP300
SGANIKGDQA  YIYTDDAGTN  NTVEIVNANT  VLGSFEATGL  NMTLGATTST  SSSTSTGTGT360
GTGTGTSTAT  SASTSVADSV  PGSSSGGSGG  QSSSGGSSDS  GSDSSDGSST  SSGSSPASTG420
FSQGGDSPKT  GAASANEHML  QGSMFAVLVA  VVALIAM457

Predicted 3D structure by AlphaFold2 with pLDDT = 78.10 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVRFAAAFVA  ALTASVAAAA  SSTTCGSGTK  CPSDKPCCSQ  YGECGTGAYC  LGGCDPINSN60
SLDACTPEPV  CESKTFNDWS  NLAGVESNDK  YLGNATESDW  VSSGKPLVHN  GELLLTMAKG120
SVGTLLAYNH  YIWYGKVSAK  LKTSRTAGVV  TAFILLSDVK  DEIDYEFVGT  ELTTAQTNFY180
FQGILDWENS  VNATTTDTFE  NYHTYEIDWT  PDDITWSLDG  KSVRVLKKAD  TYNETTQQYK240
FPQTPSRLQL  SLWPAGLSTN  APGTIAWAGG  EISWDTADIK  DPGYYYATFA  EVSVTCYDPP300
SGANIKGDQA  YIYTDDAGTN  NTVEIVNANT  VLGSFEATGL  NMTLGATTST  SSSTSTGTGT360
GTGTGTSTAT  SASTSVADSV  PGSSSGGSGG  QSSSGGSSDS  GSDSSDGSST  SSGSSPASTG420
FSQGGDSPKT  GAASANEHML  QGSMFAVLVA  VVALIAM457

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(25-55)+GH16_19(107-272)

MVRFAAAFVA  ALTASVAAAA  SSTTCGSGTK  CPSDKPCCSQ  YGECGTGAYC  LGGCDPINSN60
SLDACTPEPV  CESKTFNDWS  NLAGVESNDK  YLGNATESDW  VSSGKPLVHN  GELLLTMAKG120
SVGTLLAYNH  YIWYGKVSAK  LKTSRTAGVV  TAFILLSDVK  DEIDYEFVGT  ELTTAQTNFY180
FQGILDWENS  VNATTTDTFE  NYHTYEIDWT  PDDITWSLDG  KSVRVLKKAD  TYNETTQQYK240
FPQTPSRLQL  SLWPAGLSTN  APGTIAWAGG  EISWDTADIK  DPGYYYATFA  EVSVTCYDPP300
SGANIKGDQA  YIYTDDAGTN  NTVEIVNANT  VLGSFEATGL  NMTLGATTST  SSSTSTGTGT360
GTGTGTSTAT  SASTSVADSV  PGSSSGGSGG  QSSSGGSSDS  GSDSSDGSST  SSGSSPASTG420
FSQGGDSPKT  GAASANEHML  QGSMFAVLVA  VVALIAM457

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help