CAZyme3D

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Entry ID

Information for CAZyme ID: QKT15267.1

Basic Information

GenBank IDQKT15267.1
FamilyGT14
Sequence Length273
UniProt IDA0A6N1EWL3(100,100)Download
Average pLDDT?94.62
CAZy50 ID165345
CAZy50 RepYes, QKT15267.1
Structure ClusterSC_GT14_clus36
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1598
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusLimosilactobacillus
SpeciesLimosilactobacillus reuteri

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKHAICIMGF  GSSVIAQKTI  DKLDDKDIDF  FIHWDKKSNL  PNFKSKYSKI  SYVDRVNVNW60
GSYDEIAAEI  NLLQGVKETE  YKYDYVHLIS  STDIPLMTKE  YFKKYFNKDA  YIGFQNPTPK120
HSKERVSFYY  PTSFINVRNK  LWLIKVVKAL  NYIFRVNRLS  RKNIVIKKGP  QWFSINYKFI180
EPILNYDNDV  FKHSYLGSEV  FIQTILGYLD  NNKKNDDNEQ  AARYIKWSND  KAPHPLTLTV240
DNISELKEKL  NTKYAFARKI  VDPKVVDKLY  ERE273

Predicted 3D structure by AlphaFold2 with pLDDT = 94.62 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKHAICIMGF  GSSVIAQKTI  DKLDDKDIDF  FIHWDKKSNL  PNFKSKYSKI  SYVDRVNVNW60
GSYDEIAAEI  NLLQGVKETE  YKYDYVHLIS  STDIPLMTKE  YFKKYFNKDA  YIGFQNPTPK120
HSKERVSFYY  PTSFINVRNK  LWLIKVVKAL  NYIFRVNRLS  RKNIVIKKGP  QWFSINYKFI180
EPILNYDNDV  FKHSYLGSEV  FIQTILGYLD  NNKKNDDNEQ  AARYIKWSND  KAPHPLTLTV240
DNISELKEKL  NTKYAFARKI  VDPKVVDKLY  ERE273

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT14(7-239)

MKHAICIMGF  GSSVIAQKTI  DKLDDKDIDF  FIHWDKKSNL  PNFKSKYSKI  SYVDRVNVNW60
GSYDEIAAEI  NLLQGVKETE  YKYDYVHLIS  STDIPLMTKE  YFKKYFNKDA  YIGFQNPTPK120
HSKERVSFYY  PTSFINVRNK  LWLIKVVKAL  NYIFRVNRLS  RKNIVIKKGP  QWFSINYKFI180
EPILNYDNDV  FKHSYLGSEV  FIQTILGYLD  NNKKNDDNEQ  AARYIKWSND  KAPHPLTLTV240
DNISELKEKL  NTKYAFARKI  VDPKVVDKLY  ERE273

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help