CAZyme3D

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Entry ID

Information for CAZyme ID: QKS86851.1

Basic Information

GenBank IDQKS86851.1
FamilyCBM5, GH18
Sequence Length434
UniProt IDA0A6N1D443(100,100)Download
Average pLDDT?87.82
CAZy50 ID63140
CAZy50 RepNo, WIM20466.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID138532
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusCurtobacterium
SpeciesCurtobacterium flaccumfaciens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNQNTRVRSG  LVATIAAVIV  AGGSLTAAPA  LAATTCATAW  SASTAYNGGA  TVSENGSNYT60
ANWWTQGDEP  ATHSGATGSG  QPWTSSGTCT  GGGTGGGTTT  PGGGGTTTPG  NGSTGTGTAS120
GLVFSPYKDI  TVNLDWNTNV  MNTAVTGTRI  PVVGSSNSLV  STREPGLKAI  TLAFATGTCG180
SENWGGVAAD  AFASANIAKL  DAAGVNYIVS  TGGAAGSFKC  SGTALQSFIA  RYASPHMIGV240
DFDIESGQSA  ADVQNLVSAA  ALAQAKYPGL  RFSFTLATLA  ASDGSFGGLN  STGDATVKAI300
KASALTNYTI  NLMTMDFGRA  TTANCVIVGS  TCQMGQSTIQ  AVTNLQHTYG  IASSKIEVTP360
MIGVNDTADE  VFTLADADTV  AAYAKSHGLA  GVHTWSLDRD  TPCPTAQSTA  SPTCSSVAGT420
AALAWTDRFL  AALK434

Predicted 3D structure by AlphaFold2 with pLDDT = 87.82 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM5(39-83)+GH18(166-405)

MNQNTRVRSG  LVATIAAVIV  AGGSLTAAPA  LAATTCATAW  SASTAYNGGA  TVSENGSNYT60
ANWWTQGDEP  ATHSGATGSG  QPWTSSGTCT  GGGTGGGTTT  PGGGGTTTPG  NGSTGTGTAS120
GLVFSPYKDI  TVNLDWNTNV  MNTAVTGTRI  PVVGSSNSLV  STREPGLKAI  TLAFATGTCG180
SENWGGVAAD  AFASANIAKL  DAAGVNYIVS  TGGAAGSFKC  SGTALQSFIA  RYASPHMIGV240
DFDIESGQSA  ADVQNLVSAA  ALAQAKYPGL  RFSFTLATLA  ASDGSFGGLN  STGDATVKAI300
KASALTNYTI  NLMTMDFGRA  TTANCVIVGS  TCQMGQSTIQ  AVTNLQHTYG  IASSKIEVTP360
MIGVNDTADE  VFTLADADTV  AAYAKSHGLA  GVHTWSLDRD  TPCPTAQSTA  SPTCSSVAGT420
AALAWTDRFL  AALK434

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help