CAZyme3D

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Entry ID

Information for CAZyme ID: QKG84979.1

Basic Information

GenBank IDQKG84979.1
FamilyGT51
Sequence Length787
UniProt IDA0A7D3XJS1(100,100)Download
Average pLDDT?82.15
CAZy50 ID28705
CAZy50 RepYes, QKG84979.1
Structure ClusterSC_GT51_clus72
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1380685
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyThermoactinomycetaceae
GenusKroppenstedtia
SpeciesKroppenstedtia pulmonis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MADQQSPSSE  SQKKRSGHPG  KGNDKKRRLL  KGVVFSFLVV  LTLITVGSMA  TVGAAAGFVA60
SLVNEEPVRS  KDVLEEQITK  WSQTSYAYFR  DGSSIGRLRA  EADRKVITSE  NVSPYLVDAL120
VSTEDREFFE  HNGVVPRSIF  RAVWQQATGS  EVQTGGSTIT  QQLVKQSVLK  NSEKSTDRKA180
KEIFLAMRME  RFFSKEDILN  AYLNSVYFGK  GASGRNMLGV  QAAAQGMFGV  DAKELNLAQS240
AYIVGMVQRP  NAYNPFQGKD  TLKYGTNRMK  FVLRKMKENG  KITQKQYDEA  VAFDLKGSLA300
KKGESNAYQK  YPYITMALEE  ETAKILMKAD  GLDTKKLSKQ  GKYTATLNQY  RGEVQTGGYR360
ITTTLDKKLY  NTMNKVAQND  ALYAAPITYT  VNGRTVKNAK  EEVGATLIDN  KSGALLAFVG420
GRNFEENNRN  HAMGARRQPG  STIKPLLDFG  PGLDKGVISP  ESIIIDEPLT  HSGGTYRNYT480
NQYAGAMTAR  EALKKSMNIP  SIKVLRKVGV  QNGLDYLRKM  NFPVHEHDGE  AAAIGGFTYG540
FDVQTMTAGY  AMMGNEGKFN  EPYMIEKITD  SNGKVIYEHK  NKPVQVFSPQ  AAYWTTDMLR600
DVIKSGTGTY  VGARHPGYDL  AGKTGTTNNA  FDVWFIGYTP  DVSLGVWIGY  EYNKRVANDK660
RARIVWSSIF  SAINRADPKL  APKSSRFKSQ  PGTGFKCFEC  GRAKEMKEKD  KNEGEGNASQ720
GNQSQQRQVT  PEQGNNGNQN  NQNQQNPTPP  NNSTPPPNRG  NPDNGGSPGE  GDNGTDPGGP780
PNDGDHE787

Predicted 3D structure by AlphaFold2 with pLDDT = 82.15 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MADQQSPSSE  SQKKRSGHPG  KGNDKKRRLL  KGVVFSFLVV  LTLITVGSMA  TVGAAAGFVA60
SLVNEEPVRS  KDVLEEQITK  WSQTSYAYFR  DGSSIGRLRA  EADRKVITSE  NVSPYLVDAL120
VSTEDREFFE  HNGVVPRSIF  RAVWQQATGS  EVQTGGSTIT  QQLVKQSVLK  NSEKSTDRKA180
KEIFLAMRME  RFFSKEDILN  AYLNSVYFGK  GASGRNMLGV  QAAAQGMFGV  DAKELNLAQS240
AYIVGMVQRP  NAYNPFQGKD  TLKYGTNRMK  FVLRKMKENG  KITQKQYDEA  VAFDLKGSLA300
KKGESNAYQK  YPYITMALEE  ETAKILMKAD  GLDTKKLSKQ  GKYTATLNQY  RGEVQTGGYR360
ITTTLDKKLY  NTMNKVAQND  ALYAAPITYT  VNGRTVKNAK  EEVGATLIDN  KSGALLAFVG420
GRNFEENNRN  HAMGARRQPG  STIKPLLDFG  PGLDKGVISP  ESIIIDEPLT  HSGGTYRNYT480
NQYAGAMTAR  EALKKSMNIP  SIKVLRKVGV  QNGLDYLRKM  NFPVHEHDGE  AAAIGGFTYG540
FDVQTMTAGY  AMMGNEGKFN  EPYMIEKITD  SNGKVIYEHK  NKPVQVFSPQ  AAYWTTDMLR600
DVIKSGTGTY  VGARHPGYDL  AGKTGTTNNA  FDVWFIGYTP  DVSLGVWIGY  EYNKRVANDK660
RARIVWSSIF  SAINRADPKL  APKSSRFKSQ  PGTGFKCFEC  GRAKEMKEKD  KNEGEGNASQ720
GNQSQQRQVT  PEQGNNGNQN  NQNQQNPTPP  NNSTPPPNRG  NPDNGGSPGE  GDNGTDPGGP780
PNDGDHE787

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(92-277)

MADQQSPSSE  SQKKRSGHPG  KGNDKKRRLL  KGVVFSFLVV  LTLITVGSMA  TVGAAAGFVA60
SLVNEEPVRS  KDVLEEQITK  WSQTSYAYFR  DGSSIGRLRA  EADRKVITSE  NVSPYLVDAL120
VSTEDREFFE  HNGVVPRSIF  RAVWQQATGS  EVQTGGSTIT  QQLVKQSVLK  NSEKSTDRKA180
KEIFLAMRME  RFFSKEDILN  AYLNSVYFGK  GASGRNMLGV  QAAAQGMFGV  DAKELNLAQS240
AYIVGMVQRP  NAYNPFQGKD  TLKYGTNRMK  FVLRKMKENG  KITQKQYDEA  VAFDLKGSLA300
KKGESNAYQK  YPYITMALEE  ETAKILMKAD  GLDTKKLSKQ  GKYTATLNQY  RGEVQTGGYR360
ITTTLDKKLY  NTMNKVAQND  ALYAAPITYT  VNGRTVKNAK  EEVGATLIDN  KSGALLAFVG420
GRNFEENNRN  HAMGARRQPG  STIKPLLDFG  PGLDKGVISP  ESIIIDEPLT  HSGGTYRNYT480
NQYAGAMTAR  EALKKSMNIP  SIKVLRKVGV  QNGLDYLRKM  NFPVHEHDGE  AAAIGGFTYG540
FDVQTMTAGY  AMMGNEGKFN  EPYMIEKITD  SNGKVIYEHK  NKPVQVFSPQ  AAYWTTDMLR600
DVIKSGTGTY  VGARHPGYDL  AGKTGTTNNA  FDVWFIGYTP  DVSLGVWIGY  EYNKRVANDK660
RARIVWSSIF  SAINRADPKL  APKSSRFKSQ  PGTGFKCFEC  GRAKEMKEKD  KNEGEGNASQ720
GNQSQQRQVT  PEQGNNGNQN  NQNQQNPTPP  NNSTPPPNRG  NPDNGGSPGE  GDNGTDPGGP780
PNDGDHE787

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help