CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QKG57043.1

Basic Information

GenBank IDQKG57043.1
FamilyGH28
Sequence Length564
UniProt IDA0A7D3XAE7(100,100)Download
Average pLDDT?91.68
CAZy50 ID57364
CAZy50 RepYes, QKG57043.1
Structure ClusterSC_GH28_clus180
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2675878
KingdomBacteria
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter sp. BRD128

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLTFSSLLPG  VLLALAAWQA  IPGQAQNGRP  APTQPAPPTL  PAVRQVRLKA  DTFNIQKYGA60
VADGQTLNTQ  AFRQAIMACT  QAGGGTVLVP  AGLWLTGPIV  LQNNVNLHLA  TGALVQFTTD120
HLQYPLIKTT  WEGEEAIRSQ  APISGVGLTN  IAITGNGTFD  GAGDSWRPVK  KSKLNEGEWK180
KLLASGGVLN  EKKDSWYPSA  SSLKGNMLAA  AGTPRKSLNP  ADFDDIRDFL  RPNMLSLTDC240
KQILLEGFTI  QNSPAWTIHP  LLCQDITVRR  VTARNPWYGQ  NTDAIDVESC  RNGVLDDCVF300
SVGDDGLCIK  SGRDEEGRRR  GVPTENFLIQ  NCKVYSAHGG  FVIGSEMSGG  VRNLVVRNCT360
FQGTDVGLRF  KTARGRGGMV  ENIWVDGITM  TDIAGQAILF  DMYYAAKDPV  PQAGESTVPP420
VIAAQPLNEG  TPQFQHFYIR  NVTCKGAETG  ILVRGLPEMA  IKDISLENIV  IEANKGMLCQ480
EAENIRLKNV  TLLTRETKPV  LEVQNSKNIS  LDDIKYASGA  DLLLRVSGDR  SQDIRLTNTN540
TKLTKKGLEL  GDKVGKKVVQ  VAAK564

Predicted 3D structure by AlphaFold2 with pLDDT = 91.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLTFSSLLPG  VLLALAAWQA  IPGQAQNGRP  APTQPAPPTL  PAVRQVRLKA  DTFNIQKYGA60
VADGQTLNTQ  AFRQAIMACT  QAGGGTVLVP  AGLWLTGPIV  LQNNVNLHLA  TGALVQFTTD120
HLQYPLIKTT  WEGEEAIRSQ  APISGVGLTN  IAITGNGTFD  GAGDSWRPVK  KSKLNEGEWK180
KLLASGGVLN  EKKDSWYPSA  SSLKGNMLAA  AGTPRKSLNP  ADFDDIRDFL  RPNMLSLTDC240
KQILLEGFTI  QNSPAWTIHP  LLCQDITVRR  VTARNPWYGQ  NTDAIDVESC  RNGVLDDCVF300
SVGDDGLCIK  SGRDEEGRRR  GVPTENFLIQ  NCKVYSAHGG  FVIGSEMSGG  VRNLVVRNCT360
FQGTDVGLRF  KTARGRGGMV  ENIWVDGITM  TDIAGQAILF  DMYYAAKDPV  PQAGESTVPP420
VIAAQPLNEG  TPQFQHFYIR  NVTCKGAETG  ILVRGLPEMA  IKDISLENIV  IEANKGMLCQ480
EAENIRLKNV  TLLTRETKPV  LEVQNSKNIS  LDDIKYASGA  DLLLRVSGDR  SQDIRLTNTN540
TKLTKKGLEL  GDKVGKKVVQ  VAAK564

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH28(77-490)

MLTFSSLLPG  VLLALAAWQA  IPGQAQNGRP  APTQPAPPTL  PAVRQVRLKA  DTFNIQKYGA60
VADGQTLNTQ  AFRQAIMACT  QAGGGTVLVP  AGLWLTGPIV  LQNNVNLHLA  TGALVQFTTD120
HLQYPLIKTT  WEGEEAIRSQ  APISGVGLTN  IAITGNGTFD  GAGDSWRPVK  KSKLNEGEWK180
KLLASGGVLN  EKKDSWYPSA  SSLKGNMLAA  AGTPRKSLNP  ADFDDIRDFL  RPNMLSLTDC240
KQILLEGFTI  QNSPAWTIHP  LLCQDITVRR  VTARNPWYGQ  NTDAIDVESC  RNGVLDDCVF300
SVGDDGLCIK  SGRDEEGRRR  GVPTENFLIQ  NCKVYSAHGG  FVIGSEMSGG  VRNLVVRNCT360
FQGTDVGLRF  KTARGRGGMV  ENIWVDGITM  TDIAGQAILF  DMYYAAKDPV  PQAGESTVPP420
VIAAQPLNEG  TPQFQHFYIR  NVTCKGAETG  ILVRGLPEMA  IKDISLENIV  IEANKGMLCQ480
EAENIRLKNV  TLLTRETKPV  LEVQNSKNIS  LDDIKYASGA  DLLLRVSGDR  SQDIRLTNTN540
TKLTKKGLEL  GDKVGKKVVQ  VAAK564

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help