CAZyme3D

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Entry ID

Information for CAZyme ID: QKE89725.1

Basic Information

GenBank IDQKE89725.1
FamilyCBM47, GT0
Sequence Length478
UniProt IDA0A6M8HN50(100,100)Download
Average pLDDT?94.33
CAZy50 ID73719
CAZy50 RepYes, QKE89725.1
Structure ClusterSC_CBM47_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1484109
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyAcetobacteraceae
GenusLichenicola
SpeciesLichenicola cladoniae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDDSKRRQYE  TELKSYPDRP  LGVVRNNGAW  PAPRYRYSLA  ACARWESRYV  VEWILYHRSI60
GIDHIYLYCN  DDDPAELFEK  VLPFIEGKDP  FVTFLHYSFQ  GLQFQMYFHF  IRNYSHETDW120
MMFLDIDEFI  CIRKSNSIVA  LMEAIPSGAE  AIYFNWSSFG  CNGHDIRPDG  YVLLNYTRRE180
GRATPFTKVF  IKSRRVPYAG  FFRKKTAPVM  HDYTKLDPDI  VAYNVIGDRL  TTYYMDFPTN240
AWAYLLADDH  SERILATAFI  AHYNIKSNQD  FQLRVDRGLR  GDYAAEQMWG  NKSLHDRKMF300
NIMTNEVQDL  HLHDYWRDYL  SCGWKNAVFP  KSRWPLISQG  KSAVQSSTAH  NRSIADDAAT360
IISGRLLGAS  QNHTNLEDSP  WWQIDLGDLH  MIHEARVFNR  MDGVLDRMSR  FDLLASENET420
DWKTVLVRDE  SGLFGGIDGT  PFVSAWEEGF  AARWLRLVVP  GEKRFLHLDQ  IEFYGARC478

Predicted 3D structure by AlphaFold2 with pLDDT = 94.33 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MDDSKRRQYE  TELKSYPDRP  LGVVRNNGAW  PAPRYRYSLA  ACARWESRYV  VEWILYHRSI60
GIDHIYLYCN  DDDPAELFEK  VLPFIEGKDP  FVTFLHYSFQ  GLQFQMYFHF  IRNYSHETDW120
MMFLDIDEFI  CIRKSNSIVA  LMEAIPSGAE  AIYFNWSSFG  CNGHDIRPDG  YVLLNYTRRE180
GRATPFTKVF  IKSRRVPYAG  FFRKKTAPVM  HDYTKLDPDI  VAYNVIGDRL  TTYYMDFPTN240
AWAYLLADDH  SERILATAFI  AHYNIKSNQD  FQLRVDRGLR  GDYAAEQMWG  NKSLHDRKMF300
NIMTNEVQDL  HLHDYWRDYL  SCGWKNAVFP  KSRWPLISQG  KSAVQSSTAH  NRSIADDAAT360
IISGRLLGAS  QNHTNLEDSP  WWQIDLGDLH  MIHEARVFNR  MDGVLDRMSR  FDLLASENET420
DWKTVLVRDE  SGLFGGIDGT  PFVSAWEEGF  AARWLRLVVP  GEKRFLHLDQ  IEFYGARC478

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(44-141)+CBM47(345-468)

MDDSKRRQYE  TELKSYPDRP  LGVVRNNGAW  PAPRYRYSLA  ACARWESRYV  VEWILYHRSI60
GIDHIYLYCN  DDDPAELFEK  VLPFIEGKDP  FVTFLHYSFQ  GLQFQMYFHF  IRNYSHETDW120
MMFLDIDEFI  CIRKSNSIVA  LMEAIPSGAE  AIYFNWSSFG  CNGHDIRPDG  YVLLNYTRRE180
GRATPFTKVF  IKSRRVPYAG  FFRKKTAPVM  HDYTKLDPDI  VAYNVIGDRL  TTYYMDFPTN240
AWAYLLADDH  SERILATAFI  AHYNIKSNQD  FQLRVDRGLR  GDYAAEQMWG  NKSLHDRKMF300
NIMTNEVQDL  HLHDYWRDYL  SCGWKNAVFP  KSRWPLISQG  KSAVQSSTAH  NRSIADDAAT360
IISGRLLGAS  QNHTNLEDSP  WWQIDLGDLH  MIHEARVFNR  MDGVLDRMSR  FDLLASENET420
DWKTVLVRDE  SGLFGGIDGT  PFVSAWEEGF  AARWLRLVVP  GEKRFLHLDQ  IEFYGARC478

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help