CAZyme3D

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Entry ID

Information for CAZyme ID: QJD94165.1

Basic Information

GenBank IDQJD94165.1
FamilyCE8, GH28
Sequence Length870
UniProt IDA0A7X4KDY3(94.3,99.2)Download
Average pLDDT?90.89
CAZy50 ID21382
CAZy50 RepYes, QJD94165.1
Structure ClusterSC_CE8_clus65, SC_GH28_clus82
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2728021
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusDuganella
SpeciesDuganella dendranthematis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARRLVSLVP  LSLLAALCAP  AHAQDSRKVT  EPVAPPSCTV  LTAGPAADAT  TNDTARIQAA60
IDQCPAGRAV  RLSGSNEKQR  FVAGPLTLRS  GVSLLVDAGA  TLQASSNPKL  YDRGAGTCGT120
IDKQGRGCKP  FITIDNAKGS  GIYGEGVIDG  QGGRVVDGGT  ESWWQLARRA  QKEDARQNVP180
RLIEITNAQN  ITLHKITLRN  SPNFHVTLNK  VDGFTAWGMR  IDTPANARNT  DGIDPISSRN240
VTIAYSYIRT  GDDNVAVKAG  NNGPTENISI  VHNRFYSGHG  MSIGSETNGG  VRHVLVDDLS300
MDGTTSGLRI  KSDVSRGGVV  DQVSYRNVCL  RDVKTPIDIS  TRYAKDAQGT  QIPVFTNIDF360
DDVHSVSPGR  VVVQGYDEQR  PVQAHLHDVS  ISGKADRKIE  FARITGDAIA  SGDTSNCASR420
FVPFPESAAV  STRPQLTQDQ  ARQFSYGEVL  KYVGVAGKES  IDPWDPLSDP  LAKGAVFTPD480
YIVDKAAKAD  GVRTFNTVQE  AVSRAVLDSA  GKRLYILLKP  GVYSELVYVP  ASAAPITLYG540
DGKDAATTRI  TARLEASMTG  AAYDAVAGPQ  FAKAPPAVQA  MYATIKDRTQ  IGTFGTQTVW600
TQNNGFQARN  LTFENGYNKD  TGNARAEELP  NINNVHHQAL  ALSVDSADKA  QFENIRLIGF660
QDTLYLKSPQ  TGSTVRSFFN  KSYIEGDVDF  IFGDSTAYFY  QTEIRTLGDR  GVSYTAAPNT720
YLKTKYGFVF  DNCRFTHEGK  KNGDFYLLRQ  WFAGSRCTPY  APLALDGYRC  TYGPVNVYKT780
PTGTIARVSL  EAVGKMVVLN  SRIGAHINRQ  HPWADWNKKG  TISFRPAQYN  SDDHWNNLIS840
AGIDPVKDLG  YSKPPSPPEI  FLGEFNNSDE  870

Predicted 3D structure by AlphaFold2 with pLDDT = 90.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MARRLVSLVP  LSLLAALCAP  AHAQDSRKVT  EPVAPPSCTV  LTAGPAADAT  TNDTARIQAA60
IDQCPAGRAV  RLSGSNEKQR  FVAGPLTLRS  GVSLLVDAGA  TLQASSNPKL  YDRGAGTCGT120
IDKQGRGCKP  FITIDNAKGS  GIYGEGVIDG  QGGRVVDGGT  ESWWQLARRA  QKEDARQNVP180
RLIEITNAQN  ITLHKITLRN  SPNFHVTLNK  VDGFTAWGMR  IDTPANARNT  DGIDPISSRN240
VTIAYSYIRT  GDDNVAVKAG  NNGPTENISI  VHNRFYSGHG  MSIGSETNGG  VRHVLVDDLS300
MDGTTSGLRI  KSDVSRGGVV  DQVSYRNVCL  RDVKTPIDIS  TRYAKDAQGT  QIPVFTNIDF360
DDVHSVSPGR  VVVQGYDEQR  PVQAHLHDVS  ISGKADRKIE  FARITGDAIA  SGDTSNCASR420
FVPFPESAAV  STRPQLTQDQ  ARQFSYGEVL  KYVGVAGKES  IDPWDPLSDP  LAKGAVFTPD480
YIVDKAAKAD  GVRTFNTVQE  AVSRAVLDSA  GKRLYILLKP  GVYSELVYVP  ASAAPITLYG540
DGKDAATTRI  TARLEASMTG  AAYDAVAGPQ  FAKAPPAVQA  MYATIKDRTQ  IGTFGTQTVW600
TQNNGFQARN  LTFENGYNKD  TGNARAEELP  NINNVHHQAL  ALSVDSADKA  QFENIRLIGF660
QDTLYLKSPQ  TGSTVRSFFN  KSYIEGDVDF  IFGDSTAYFY  QTEIRTLGDR  GVSYTAAPNT720
YLKTKYGFVF  DNCRFTHEGK  KNGDFYLLRQ  WFAGSRCTPY  APLALDGYRC  TYGPVNVYKT780
PTGTIARVSL  EAVGKMVVLN  SRIGAHINRQ  HPWADWNKKG  TISFRPAQYN  SDDHWNNLIS840
AGIDPVKDLG  YSKPPSPPEI  FLGEFNNSDE  870

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH28(80-398)+CE8(488-829)

MTARRLVPLA  LFVAFWAPAH  AQDSRKVTEP  VAPPSCTVLT  AGGAVDDTAR  IQSAIDQCPA60
GRAVRLSGSN  EKQRFVAGPL  ALRSGVSLLV  DTGATLQASS  NPKLYDRGAG  TCGTIDNQGR120
GCKPFITIDN  AKGSGIYGEG  VIDGQGGHVV  DGGTESWWQL  ARRAQKEDAR  QNVPRLIEVT180
NAQNITLHKI  TLRNSPNFHV  TLNKVDGFTA  WGMRIDTPAT  ARNTDGIDPI  SSRNVTIAYS240
HIRTGDDNVA  VKAGNNGPTE  NISIVHNRFY  SGHGMSIGSE  TNGGVRNVLV  DDLSMDGTTS300
GLRIKSDVSR  GGVVDRVSYR  NVCLRDVKTP  IDISTRYARD  AQGTQVPVFT  NIDFDDVHSV360
SPGRVVVQGY  DEQHPVLAHL  RDVSITGKAD  RKIEFARLTG  DAISSSDTSN  CASRFVPFPE420
SAAVSTRPQL  TQDQARQFSY  GEVLKYVGVA  GKETVDPWDP  LNDPLAKGAV  FTPDYIVDKA480
AKADGVRTFN  TVQEAVSRAV  LDSASKRLYI  LLKPGVYPEL  VYVPASAAPI  TLYGEGKDAA540
ATRITARLEA  SMTGAAYDAV  AGPQFARAAP  AVQAMYATIK  DRAQIGTFGT  QTVWTQNNGF600
QARNLTFENG  YNKDTGNARA  EELPNINNVH  HQALALSVDS  ADKAQFENIR  LIGFQDTLYL660
KSPQIGSTVR  SFFNKSYIEG  DVDFIFGDST  AYFYQTEIRT  LGDRGVSYTA  APNTYLKTKY720
GFVFDNCRFT  HEGKKTGDFY  LLRQWFASSR  CTPYAPLALD  GYSCTYGPVN  VYKAPTGTVA780
RVSLEAVGKM  VVLNSRIGAH  INRQHPWADW  NKKGTISFRP  AQYNSDDHWN  NLIKAGIDPV840
KDLGYSTPPS  PPEVFLGEFN  NSDE864

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help