Information for CAZyme ID: QJD94165.1
Basic Information
GenBank ID | QJD94165.1 |
Family | CE8, GH28 |
Sequence Length | 870 |
UniProt ID | A0A7X4KDY3(94.3,99.2)![]() |
Average pLDDT? | 90.89 |
CAZy50 ID | 21382 |
CAZy50 Rep | Yes, QJD94165.1 |
Structure Cluster | SC_CE8_clus65, SC_GH28_clus82 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2728021 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Betaproteobacteria |
Order | Burkholderiales |
Family | Oxalobacteraceae |
Genus | Duganella |
Species | Duganella dendranthematis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MARRLVSLVP LSLLAALCAP AHAQDSRKVT EPVAPPSCTV LTAGPAADAT TNDTARIQAA | 60 |
IDQCPAGRAV RLSGSNEKQR FVAGPLTLRS GVSLLVDAGA TLQASSNPKL YDRGAGTCGT | 120 |
IDKQGRGCKP FITIDNAKGS GIYGEGVIDG QGGRVVDGGT ESWWQLARRA QKEDARQNVP | 180 |
RLIEITNAQN ITLHKITLRN SPNFHVTLNK VDGFTAWGMR IDTPANARNT DGIDPISSRN | 240 |
VTIAYSYIRT GDDNVAVKAG NNGPTENISI VHNRFYSGHG MSIGSETNGG VRHVLVDDLS | 300 |
MDGTTSGLRI KSDVSRGGVV DQVSYRNVCL RDVKTPIDIS TRYAKDAQGT QIPVFTNIDF | 360 |
DDVHSVSPGR VVVQGYDEQR PVQAHLHDVS ISGKADRKIE FARITGDAIA SGDTSNCASR | 420 |
FVPFPESAAV STRPQLTQDQ ARQFSYGEVL KYVGVAGKES IDPWDPLSDP LAKGAVFTPD | 480 |
YIVDKAAKAD GVRTFNTVQE AVSRAVLDSA GKRLYILLKP GVYSELVYVP ASAAPITLYG | 540 |
DGKDAATTRI TARLEASMTG AAYDAVAGPQ FAKAPPAVQA MYATIKDRTQ IGTFGTQTVW | 600 |
TQNNGFQARN LTFENGYNKD TGNARAEELP NINNVHHQAL ALSVDSADKA QFENIRLIGF | 660 |
QDTLYLKSPQ TGSTVRSFFN KSYIEGDVDF IFGDSTAYFY QTEIRTLGDR GVSYTAAPNT | 720 |
YLKTKYGFVF DNCRFTHEGK KNGDFYLLRQ WFAGSRCTPY APLALDGYRC TYGPVNVYKT | 780 |
PTGTIARVSL EAVGKMVVLN SRIGAHINRQ HPWADWNKKG TISFRPAQYN SDDHWNNLIS | 840 |
AGIDPVKDLG YSKPPSPPEI FLGEFNNSDE | 870 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.89 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MARRLVSLVP LSLLAALCAP AHAQDSRKVT EPVAPPSCTV LTAGPAADAT TNDTARIQAA | 60 |
IDQCPAGRAV RLSGSNEKQR FVAGPLTLRS GVSLLVDAGA TLQASSNPKL YDRGAGTCGT | 120 |
IDKQGRGCKP FITIDNAKGS GIYGEGVIDG QGGRVVDGGT ESWWQLARRA QKEDARQNVP | 180 |
RLIEITNAQN ITLHKITLRN SPNFHVTLNK VDGFTAWGMR IDTPANARNT DGIDPISSRN | 240 |
VTIAYSYIRT GDDNVAVKAG NNGPTENISI VHNRFYSGHG MSIGSETNGG VRHVLVDDLS | 300 |
MDGTTSGLRI KSDVSRGGVV DQVSYRNVCL RDVKTPIDIS TRYAKDAQGT QIPVFTNIDF | 360 |
DDVHSVSPGR VVVQGYDEQR PVQAHLHDVS ISGKADRKIE FARITGDAIA SGDTSNCASR | 420 |
FVPFPESAAV STRPQLTQDQ ARQFSYGEVL KYVGVAGKES IDPWDPLSDP LAKGAVFTPD | 480 |
YIVDKAAKAD GVRTFNTVQE AVSRAVLDSA GKRLYILLKP GVYSELVYVP ASAAPITLYG | 540 |
DGKDAATTRI TARLEASMTG AAYDAVAGPQ FAKAPPAVQA MYATIKDRTQ IGTFGTQTVW | 600 |
TQNNGFQARN LTFENGYNKD TGNARAEELP NINNVHHQAL ALSVDSADKA QFENIRLIGF | 660 |
QDTLYLKSPQ TGSTVRSFFN KSYIEGDVDF IFGDSTAYFY QTEIRTLGDR GVSYTAAPNT | 720 |
YLKTKYGFVF DNCRFTHEGK KNGDFYLLRQ WFAGSRCTPY APLALDGYRC TYGPVNVYKT | 780 |
PTGTIARVSL EAVGKMVVLN SRIGAHINRQ HPWADWNKKG TISFRPAQYN SDDHWNNLIS | 840 |
AGIDPVKDLG YSKPPSPPEI FLGEFNNSDE | 870 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.