Basic information |
Taxonomy |
Protein Sequence |
Structure visualization |
Binding Residues |
dbCAN domains |
Homology within Cluster
Information for CAZyme ID: QJD81324.1
Basic Information
| GenBank ID | QJD81324.1 |
| Family | CBM13 |
| Sequence Length | 1266 |
| UniProt ID | A0A7L5DS47(100,100) |
| Average pLDDT? | 85.04 |
| CAZy50 ID | 6668 |
| CAZy50 Rep | Yes, QJD81324.1 |
| Structure Cluster | SC_CBM13_clus11 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2728024 |
| Kingdom | Bacteria |
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Spirosoma |
| Species | Spirosoma rhododendri |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MILVLALSIQ SYSQTRRSVP FSFNLSANAQ TSAGVFAKDG TLVRTLWSGV SLNAGAYTKY | 60 |
| WDGLDDKGQT AANATYDIRL ISNNVSYTWE GVIGNSSFGN SQGNGLQRAF IRTKGMAIAG | 120 |
| DYAYYGAGYA EGNPSQARFA LSNPQQRLDF FPKGSTDQAT LFVATDGKLV YWAGYDGYDN | 180 |
| GNKWFVFATR TADNGEQSFA NGQALKMAMG RTYASAIDVI NGAAGVVTGM AVQKNGKYLF | 240 |
| VSHKSRHQIR VLDKTTGNLV QSLFFNDAAG LSVDGQDNLW IINGNTVSRF TVNNDGTLSN | 300 |
| ATLSLSGLNS PMALAVSPDN QTVVVADGGD SQQVKAYSNS TGASVWTLGQ AGGYRTDPTV | 360 |
| ANDKFYFSDA SGGINDTFVA FAPDGSFWVG DSGNYRVQHY SAGRSYIDRI MYLQNNYSSF | 420 |
| IDQNNPNRLF AEFLEFAVDY SKPLGGTNGS WTLVKNWRAA MPANYFESLT INHTYITNIF | 480 |
| RDVLTLSNGR VYGFLRRFND NKWVLAELPA NGPLRITKIA FDAQNRYTYH IASDGSLRQS | 540 |
| ANNINGTSGS VVWESRRLTG FDADNDPVWA PATSYASAPV NSGGEPINWY GGQSRTGETT | 600 |
| SSGVVVSFDE GKINGPTGAG YHLGGLRVGD NKWLWKTAMA TTAAYKGPYP NDGAYDVGNG | 660 |
| VEYGGGGIAV LDRSIFWNYH GEFWKGSQVN KWQHVYDNGL LLGIFGKTGP EVRIEAPDGR | 720 |
| PVAGMAGNVY FGTAVRASNG VTYLYHGEES GWGGIHRWRI DNMQSIQEQV IGLKSLDSYA | 780 |
| VSTTTPGTEG IDLLSGLSPS SVLQDGTAGW NRNPAAENTA GADNKWTAKT SIMSYDRFAS | 840 |
| PDLYVNFSKA STQYTVTRDL GNNTNLGSWS LQGVISFDNT NPNNGTPGQS DSGGSYFEVL | 900 |
| DNAGKVLARL YNQVFFDQAG TPVKTMGNGQ QIAQGYYFDP ASAVGSAADA INISLSNGSL | 960 |
| TIKYRDYPAV TTGALEAGGN LQNPRTVRLF FWCNGRNYER TIDIQQLRFI TGVTTASVAP | 1020 |
| TPTPTPTTPT FATSGKVYTI KAKQSAKFID VSGQSVADGE SIIQWTYNGG KNQQWKLTQA | 1080 |
| TGSYFTFQSV NSGKVLDIVS ASTADGAKVN QWSANGQTNQ QFKLVDAGSG YVNIVVNNSQ | 1140 |
| KCLDITNQST ADGAAIVQNT CGGSDSQKFL LSEIASGSGR LSAVDIQPEA GFNLFAYPNP | 1200 |
| ATDLITITGA KDQLVTFTDL TGHTLLEVTC VSDAEQVSVQ SLPMGSYIVR RHSALNPVSQ | 1260 |
| KLLIVR | 1266 |
Predicted 3D structure by AlphaFold2 with pLDDT = 85.04 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MILVLALSIQ SYSQTRRSVP FSFNLSANAQ TSAGVFAKDG TLVRTLWSGV SLNAGAYTKY | 60 |
| WDGLDDKGQT AANATYDIRL ISNNVSYTWE GVIGNSSFGN SQGNGLQRAF IRTKGMAIAG | 120 |
| DYAYYGAGYA EGNPSQARFA LSNPQQRLDF FPKGSTDQAT LFVATDGKLV YWAGYDGYDN | 180 |
| GNKWFVFATR TADNGEQSFA NGQALKMAMG RTYASAIDVI NGAAGVVTGM AVQKNGKYLF | 240 |
| VSHKSRHQIR VLDKTTGNLV QSLFFNDAAG LSVDGQDNLW IINGNTVSRF TVNNDGTLSN | 300 |
| ATLSLSGLNS PMALAVSPDN QTVVVADGGD SQQVKAYSNS TGASVWTLGQ AGGYRTDPTV | 360 |
| ANDKFYFSDA SGGINDTFVA FAPDGSFWVG DSGNYRVQHY SAGRSYIDRI MYLQNNYSSF | 420 |
| IDQNNPNRLF AEFLEFAVDY SKPLGGTNGS WTLVKNWRAA MPANYFESLT INHTYITNIF | 480 |
| RDVLTLSNGR VYGFLRRFND NKWVLAELPA NGPLRITKIA FDAQNRYTYH IASDGSLRQS | 540 |
| ANNINGTSGS VVWESRRLTG FDADNDPVWA PATSYASAPV NSGGEPINWY GGQSRTGETT | 600 |
| SSGVVVSFDE GKINGPTGAG YHLGGLRVGD NKWLWKTAMA TTAAYKGPYP NDGAYDVGNG | 660 |
| VEYGGGGIAV LDRSIFWNYH GEFWKGSQVN KWQHVYDNGL LLGIFGKTGP EVRIEAPDGR | 720 |
| PVAGMAGNVY FGTAVRASNG VTYLYHGEES GWGGIHRWRI DNMQSIQEQV IGLKSLDSYA | 780 |
| VSTTTPGTEG IDLLSGLSPS SVLQDGTAGW NRNPAAENTA GADNKWTAKT SIMSYDRFAS | 840 |
| PDLYVNFSKA STQYTVTRDL GNNTNLGSWS LQGVISFDNT NPNNGTPGQS DSGGSYFEVL | 900 |
| DNAGKVLARL YNQVFFDQAG TPVKTMGNGQ QIAQGYYFDP ASAVGSAADA INISLSNGSL | 960 |
| TIKYRDYPAV TTGALEAGGN LQNPRTVRLF FWCNGRNYER TIDIQQLRFI TGVTTASVAP | 1020 |
| TPTPTPTTPT FATSGKVYTI KAKQSAKFID VSGQSVADGE SIIQWTYNGG KNQQWKLTQA | 1080 |
| TGSYFTFQSV NSGKVLDIVS ASTADGAKVN QWSANGQTNQ QFKLVDAGSG YVNIVVNNSQ | 1140 |
| KCLDITNQST ADGAAIVQNT CGGSDSQKFL LSEIASGSGR LSAVDIQPEA GFNLFAYPNP | 1200 |
| ATDLITITGA KDQLVTFTDL TGHTLLEVTC VSDAEQVSVQ SLPMGSYIVR RHSALNPVSQ | 1260 |
| KLLIVR | 1266 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.