Information for CAZyme ID: QIO35872.1
Basic Information
| GenBank ID | QIO35872.1 |
| Family | GH5 |
| Sequence Length | 496 |
| UniProt ID | A0A6G8UA61(100,100) |
| Average pLDDT? | 85.85 |
| CAZy50 ID | 69772 |
| CAZy50 Rep | Yes, QIO35872.1 |
| Structure Cluster | SC_GH5_clus299 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1404888 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Bradyrhizobium |
| Species | Bradyrhizobium sp. 1(2017) |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MMVAIAEEAR AFKLLRAALN RLLRTYGRRF LRHSLSPPRL PLRKCLNDAS KRLSSTTVVG | 60 |
| VGIYLWICGT LAAAGLQNDT LAFSDSGRTL VCMNVFQPFG YGKSIGPPGS AVYTASPFEN | 120 |
| GGSDTQVLPN SRLELAKSLG FDCLRMVVDV GALMSAETEP QLDALVEQIG IGISRRIRSG | 180 |
| LRVIVDVHPF PVGTHPVPGF ADVDLIDGPD GPRFQRLIHV VRKLAQAVRD HFSAAEVAVE | 240 |
| LFNEPPPPES FRTRRAWNEQ VEYYWRQIRV VLPSHTLIVA GTGYAGLDGL ISGDPSAGVV | 300 |
| NLRPEQFDAN TGFAIHPYES ATFTHQGYPG FFSHVRALPF PAGDEAAMRR AKEMFRNTVI | 360 |
| DDPSLSLLEK FKLVLGFVYR GSHSYSFDKY STEFGNVELL SKRLNVVTAW ADKHHLSRRQ | 420 |
| IMNTEFGVNH DQDGCSGKAS AVSAFNFIRA IRDISDASKL GLITIHQLQG DCFGIASSSP | 480 |
| PYDFDPDIID ALRLGK | 496 |
Predicted 3D structure by AlphaFold2 with pLDDT = 85.85 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MMVAIAEEAR AFKLLRAALN RLLRTYGRRF LRHSLSPPRL PLRKCLNDAS KRLSSTTVVG | 60 |
| VGIYLWICGT LAAAGLQNDT LAFSDSGRTL VCMNVFQPFG YGKSIGPPGS AVYTASPFEN | 120 |
| GGSDTQVLPN SRLELAKSLG FDCLRMVVDV GALMSAETEP QLDALVEQIG IGISRRIRSG | 180 |
| LRVIVDVHPF PVGTHPVPGF ADVDLIDGPD GPRFQRLIHV VRKLAQAVRD HFSAAEVAVE | 240 |
| LFNEPPPPES FRTRRAWNEQ VEYYWRQIRV VLPSHTLIVA GTGYAGLDGL ISGDPSAGVV | 300 |
| NLRPEQFDAN TGFAIHPYES ATFTHQGYPG FFSHVRALPF PAGDEAAMRR AKEMFRNTVI | 360 |
| DDPSLSLLEK FKLVLGFVYR GSHSYSFDKY STEFGNVELL SKRLNVVTAW ADKHHLSRRQ | 420 |
| IMNTEFGVNH DQDGCSGKAS AVSAFNFIRA IRDISDASKL GLITIHQLQG DCFGIASSSP | 480 |
| PYDFDPDIID ALRLGK | 496 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.