CAZyme3D

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Entry ID

Information for CAZyme ID: QIL48940.1

Basic Information

GenBank IDQIL48940.1
FamilyGH84
Sequence Length537
UniProt IDA0A6G8AVC8(100,100)Download
Average pLDDT?95.77
CAZy50 ID61744
CAZy50 RepYes, QIL48940.1
Structure ClusterSC_GH84_clus15
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2714947
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyEnterococcaceae
GenusVagococcus
SpeciesVagococcus hydrophili

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRHYDEVMID  REYSFVEKEK  IVIRFEGYFF  RFETYQAVID  EELFCDYVTW  QNNDVDTTFD60
FTLKHVYDRE  LVHDSFSLKI  GSDKVITIAT  KTRRGFDYAQ  KALVEMLVKK  EKGILVKHGQ120
ISHTPSFEMR  GIIEGFYGVP  WTWDNRQDCI  QLLVENQMNT  YMYAPKDDEY  QRKLWRELYP180
DSYLNEFKKL  LKTAEEKKID  FWYMISPGND  IDYLKQSELE  VLFTKLRQII  DLGINHFGLL240
LDDIDYILKD  KAKIKFGTSA  KAHAYIVNQV  DEFLSGELAN  YQLVTCPTEY  DNHHDAEYLE300
ILNNNLKPHI  PLFWTGPSTL  AAKISHENIQ  KMAAVYQREF  IIWDNVPVND  FEKDHERLFL360
SPYDNRSKFL  AEEKYHVRGI  VLNPMAQWEW  SKLTINHAAR  YLWEVSSFNQ  ETVWLESLKQ420
SFDEEYLEAV  QVFLKHNHNR  HTHNVRSFEM  EQALEMKDKN  KLSEWLIELN  VAIEKLSELE480
NHPMIKEGTP  WFERAKLDFE  LWQAILASDK  VKVEELKEVC  QKSNYRIGTD  LVMGYLG537

Predicted 3D structure by AlphaFold2 with pLDDT = 95.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRHYDEVMID  REYSFVEKEK  IVIRFEGYFF  RFETYQAVID  EELFCDYVTW  QNNDVDTTFD60
FTLKHVYDRE  LVHDSFSLKI  GSDKVITIAT  KTRRGFDYAQ  KALVEMLVKK  EKGILVKHGQ120
ISHTPSFEMR  GIIEGFYGVP  WTWDNRQDCI  QLLVENQMNT  YMYAPKDDEY  QRKLWRELYP180
DSYLNEFKKL  LKTAEEKKID  FWYMISPGND  IDYLKQSELE  VLFTKLRQII  DLGINHFGLL240
LDDIDYILKD  KAKIKFGTSA  KAHAYIVNQV  DEFLSGELAN  YQLVTCPTEY  DNHHDAEYLE300
ILNNNLKPHI  PLFWTGPSTL  AAKISHENIQ  KMAAVYQREF  IIWDNVPVND  FEKDHERLFL360
SPYDNRSKFL  AEEKYHVRGI  VLNPMAQWEW  SKLTINHAAR  YLWEVSSFNQ  ETVWLESLKQ420
SFDEEYLEAV  QVFLKHNHNR  HTHNVRSFEM  EQALEMKDKN  KLSEWLIELN  VAIEKLSELE480
NHPMIKEGTP  WFERAKLDFE  LWQAILASDK  VKVEELKEVC  QKSNYRIGTD  LVMGYLG537

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH84(130-434)

MRHYDEVMID  REYSFVEKEK  IVIRFEGYFF  RFETYQAVID  EELFCDYVTW  QNNDVDTTFD60
FTLKHVYDRE  LVHDSFSLKI  GSDKVITIAT  KTRRGFDYAQ  KALVEMLVKK  EKGILVKHGQ120
ISHTPSFEMR  GIIEGFYGVP  WTWDNRQDCI  QLLVENQMNT  YMYAPKDDEY  QRKLWRELYP180
DSYLNEFKKL  LKTAEEKKID  FWYMISPGND  IDYLKQSELE  VLFTKLRQII  DLGINHFGLL240
LDDIDYILKD  KAKIKFGTSA  KAHAYIVNQV  DEFLSGELAN  YQLVTCPTEY  DNHHDAEYLE300
ILNNNLKPHI  PLFWTGPSTL  AAKISHENIQ  KMAAVYQREF  IIWDNVPVND  FEKDHERLFL360
SPYDNRSKFL  AEEKYHVRGI  VLNPMAQWEW  SKLTINHAAR  YLWEVSSFNQ  ETVWLESLKQ420
SFDEEYLEAV  QVFLKHNHNR  HTHNVRSFEM  EQALEMKDKN  KLSEWLIELN  VAIEKLSELE480
NHPMIKEGTP  WFERAKLDFE  LWQAILASDK  VKVEELKEVC  QKSNYRIGTD  LVMGYLG537

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help