CAZyme3D

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Entry ID

Information for CAZyme ID: QIB02547.1

Basic Information

GenBank IDQIB02547.1
FamilyGH34
Sequence Length495
UniProt IDA0A6C0TLC2(100,100)Download
Average pLDDT?81.07
CAZy50 ID69868
CAZy50 RepYes, QIB02547.1
Structure ClusterSC_GH34_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID11320
KingdomViruses
PhylumNegarnaviricota
ClassInsthoviricetes
OrderArticulavirales
FamilyOrthomyxoviridae
GenusAlphainfluenzavirus
SpeciesAlphainfluenzavirus influenzae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNPNQKIITI  GSVSLIIATI  CFLMQIAILV  TTVTLHFKQH  DCDSSPNNQV  MFCEPTIIER60
NKTEIVYLNN  TTVEKEICPK  PAEYRNWSKP  QCNITGFAPF  SKDNSIRLSA  GGDIWVTREP120
YVSCDFDKCY  QFALGQGTTL  NNGHSNDTVH  DRTPYRTLLM  NELGVPFHLG  TRQVCIAWSS180
SSCHDGKAWL  HVCITGDDKN  ATASFIYNGR  LVDSIGSWSK  NILRTQESEC  VCINGTCTVV240
MTDGSASGKA  DTKILFIEEG  RIIHISTLSG  SAQHVEECSC  YPRYPGVIIH  ISTLSGSAQH300
VEECSCYPRY  PGVRCVCRDN  WKGSNRPIVD  INVKDYSIAS  SYVCSGLVGD  TPRKNDSFSS360
SHCIDPNNEE  GGHGVKGWAF  DDGNDVWMGR  TISEKSRLGY  ETFKVIKGWS  KPNSKLQTNR420
QVIVGRDNRS  GYXGIFSVEG  KNCIDRCXYV  ELIRGRKEET  KVWWTSNSIV  VFCGTSGTYG480
TGSWPDGADI  NLMPI495

Predicted 3D structure by AlphaFold2 with pLDDT = 81.07 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNPNQKIITI  GSVSLIIATI  CFLMQIAILV  TTVTLHFKQH  DCDSSPNNQV  MFCEPTIIER60
NKTEIVYLNN  TTVEKEICPK  PAEYRNWSKP  QCNITGFAPF  SKDNSIRLSA  GGDIWVTREP120
YVSCDFDKCY  QFALGQGTTL  NNGHSNDTVH  DRTPYRTLLM  NELGVPFHLG  TRQVCIAWSS180
SSCHDGKAWL  HVCITGDDKN  ATASFIYNGR  LVDSIGSWSK  NILRTQESEC  VCINGTCTVV240
MTDGSASGKA  DTKILFIEEG  RIIHISTLSG  SAQHVEECSC  YPRYPGVIIH  ISTLSGSAQH300
VEECSCYPRY  PGVRCVCRDN  WKGSNRPIVD  INVKDYSIAS  SYVCSGLVGD  TPRKNDSFSS360
SHCIDPNNEE  GGHGVKGWAF  DDGNDVWMGR  TISEKSRLGY  ETFKVIKGWS  KPNSKLQTNR420
QVIVGRDNRS  GYXGIFSVEG  KNCIDRCXYV  ELIRGRKEET  KVWWTSNSIV  VFCGTSGTYG480
TGSWPDGADI  NLMPI495

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH34(1-287)+GH34(286-492)

MNPNQKIITI  GSVSLIIATI  CFLMQIAILV  TTVTLHFKQH  DCDSSPNNQV  MFCEPTIIER60
NKTEIVYLNN  TTVEKEICPK  PAEYRNWSKP  QCNITGFAPF  SKDNSIRLSA  GGDIWVTREP120
YVSCDFDKCY  QFALGQGTTL  NNGHSNDTVH  DRTPYRTLLM  NELGVPFHLG  TRQVCIAWSS180
SSCHDGKAWL  HVCITGDDKN  ATASFIYNGR  LVDSIGSWSK  NILRTQESEC  VCINGTCTVV240
MTDGSASGKA  DTKILFIEEG  RIIHISTLSG  SAQHVEECSC  YPRYPGVIIH  ISTLSGSAQH300
VEECSCYPRY  PGVRCVCRDN  WKGSNRPIVD  INVKDYSIAS  SYVCSGLVGD  TPRKNDSFSS360
SHCIDPNNEE  GGHGVKGWAF  DDGNDVWMGR  TISEKSRLGY  ETFKVIKGWS  KPNSKLQTNR420
QVIVGRDNRS  GYGIFSVEGK  NCIDRCYVEL  IRGRKEETKV  WWTSNSIVVF  CGTSGTYGTG480
SWPDGADINL  MPI493

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help