CAZyme3D

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Entry ID

Information for CAZyme ID: QHN78498.1

Basic Information

GenBank IDQHN78498.1
FamilyGH116
Sequence Length980
UniProt IDA0A444XRP1(100,100)Download
Average pLDDT?83.38
CAZy50 ID15218
CAZy50 RepYes, QHN78498.1
Structure ClusterSC_GH116_clus32
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3818
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderFabales
FamilyFabaceae
GenusArachis
SpeciesArachis hypogaea

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVSGNIFHCR  KNSWPPEEYI  NKATLQLFDF  DSAAPPEQAW  RRRLNSHANL  LKEFSVTFME60
AIKMVRLGIR  IWSYVREEAS  HGRKAPIDPF  TRESCKPSAT  QGVPLGGMGS  GSISRGFRGE120
FRQWQIIPGL  CEASPVMANQ  FSIFVSRDGG  NKSFASVLAP  GQHEGLGSHK  KADDQGISSW180
GWNLNGQHST  YHALFPRAWT  VYDGEPDPEL  KVSCRQISPF  IPHNYRESSL  PAAVFVYTLV240
NTGKERAKVS  LLFTWANSIG  GNSHLTGGHV  NEPFIAEDGV  SGVLLHHKTG  KGNPPVTFAI300
AACETQNVSV  SVLPKFGLSE  KSSTTAKGMW  CKMVQDGQFD  RENFSSGASM  PSSPGETLCA360
AVSASTWVEP  HGKCTVAFSL  AWSSPKVKFS  KGSTFHRRYT  KFYGTSERAA  KDLAHDALTQ420
YKRWEEDIEK  WQNPILQDES  LPEWYKFTLF  NELYFLVAGG  TIWIDSPLPS  SNMRNKSRDQ480
VKELENTEVK  VTEAKVSRRQ  GADAGRTTDS  TYDVEYTTDS  ASDVDCMVDG  VDEKHRGDLS540
HESDASVTLA  MMDQQYDRDD  VGRFLYLEGV  EYIMWCTYDV  HFYASFALLE  LFPRIELNIQ600
RDFAKAVLCE  DGRKVKFLAE  GNCGIRKVRG  AVPHDLGTHD  PWREMNAYNI  HDTSKWKDLN660
PKFVLQVYRD  FAATGDMSFG  VDVWPAVRAA  MEYMEQFDRD  GDGLIENDGF  PDQTYDTWTV720
HGVSAYCGCL  WLAALQAAAA  MALQLGDRDF  AETCKRKFLK  AKPAFEQKLW  NGSYFNYDSG780
SSSNSKSIQA  DQLAGQWYTA  SSGLPPLFDE  SKIKSALRKV  YDFNVMKVKG  GKMGAVNGMH840
PNGKVDETCM  QSREIWTGVT  YGVASTMILA  GMEEEAFATA  EGIFQAGWSE  DGYGYWFQTP900
EAWTMDGHYR  SLIYMRPLSI  WGMQYALTLP  KAILDAPKIN  IMDRIHLSPL  NGGFPHNETG960
VRKIANKAKC  FGNSVFHCAC  980

Predicted 3D structure by AlphaFold2 with pLDDT = 83.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVSGNIFHCR  KNSWPPEEYI  NKATLQLFDF  DSAAPPEQAW  RRRLNSHANL  LKEFSVTFME60
AIKMVRLGIR  IWSYVREEAS  HGRKAPIDPF  TRESCKPSAT  QGVPLGGMGS  GSISRGFRGE120
FRQWQIIPGL  CEASPVMANQ  FSIFVSRDGG  NKSFASVLAP  GQHEGLGSHK  KADDQGISSW180
GWNLNGQHST  YHALFPRAWT  VYDGEPDPEL  KVSCRQISPF  IPHNYRESSL  PAAVFVYTLV240
NTGKERAKVS  LLFTWANSIG  GNSHLTGGHV  NEPFIAEDGV  SGVLLHHKTG  KGNPPVTFAI300
AACETQNVSV  SVLPKFGLSE  KSSTTAKGMW  CKMVQDGQFD  RENFSSGASM  PSSPGETLCA360
AVSASTWVEP  HGKCTVAFSL  AWSSPKVKFS  KGSTFHRRYT  KFYGTSERAA  KDLAHDALTQ420
YKRWEEDIEK  WQNPILQDES  LPEWYKFTLF  NELYFLVAGG  TIWIDSPLPS  SNMRNKSRDQ480
VKELENTEVK  VTEAKVSRRQ  GADAGRTTDS  TYDVEYTTDS  ASDVDCMVDG  VDEKHRGDLS540
HESDASVTLA  MMDQQYDRDD  VGRFLYLEGV  EYIMWCTYDV  HFYASFALLE  LFPRIELNIQ600
RDFAKAVLCE  DGRKVKFLAE  GNCGIRKVRG  AVPHDLGTHD  PWREMNAYNI  HDTSKWKDLN660
PKFVLQVYRD  FAATGDMSFG  VDVWPAVRAA  MEYMEQFDRD  GDGLIENDGF  PDQTYDTWTV720
HGVSAYCGCL  WLAALQAAAA  MALQLGDRDF  AETCKRKFLK  AKPAFEQKLW  NGSYFNYDSG780
SSSNSKSIQA  DQLAGQWYTA  SSGLPPLFDE  SKIKSALRKV  YDFNVMKVKG  GKMGAVNGMH840
PNGKVDETCM  QSREIWTGVT  YGVASTMILA  GMEEEAFATA  EGIFQAGWSE  DGYGYWFQTP900
EAWTMDGHYR  SLIYMRPLSI  WGMQYALTLP  KAILDAPKIN  IMDRIHLSPL  NGGFPHNETG960
VRKIANKAKC  FGNSVFHCAC  980

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH116(562-924)

MVSGNIFHCR  KNSWPPEEYI  NKATLQLFDF  DSAAPPEQAW  RRRLNSHANL  LKEFSVTFME60
AIKMVRLGIR  IWSYVREEAS  HGRKAPIDPF  TRESCKPSAT  QGVPLGGMGS  GSISRGFRGE120
FRQWQIIPGL  CEASPVMANQ  FSIFVSRDGG  NKSFASVLAP  GQHEGLGSHK  KADDQGISSW180
GWNLNGQHST  YHALFPRAWT  VYDGEPDPEL  KVSCRQISPF  IPHNYRESSL  PAAVFVYTLV240
NTGKERAKVS  LLFTWANSIG  GNSHLTGGHV  NEPFIAEDGV  SGVLLHHKTG  KGNPPVTFAI300
AACETQNVSV  SVLPKFGLSE  KSSTTAKGMW  CKMVQDGQFD  RENFSSGASM  PSSPGETLCA360
AVSASTWVEP  HGKCTVAFSL  AWSSPKVKFS  KGSTFHRRYT  KFYGTSERAA  KDLAHDALTQ420
YKRWEEDIEK  WQNPILQDES  LPEWYKFTLF  NELYFLVAGG  TIWIDSPLPS  SNMRNKSRDQ480
VKELENTEVK  VTEAKVSRRQ  GADAGRTTDS  TYDVEYTTDS  ASDVDCMVDG  VDEKHRGDLS540
HESDASVTLA  MMDQQYDRDD  VGRFLYLEGV  EYIMWCTYDV  HFYASFALLE  LFPRIELNIQ600
RDFAKAVLCE  DGRKVKFLAE  GNCGIRKVRG  AVPHDLGTHD  PWREMNAYNI  HDTSKWKDLN660
PKFVLQVYRD  FAATGDMSFG  VDVWPAVRAA  MEYMEQFDRD  GDGLIENDGF  PDQTYDTWTV720
HGVSAYCGCL  WLAALQAAAA  MALQLGDRDF  AETCKRKFLK  AKPAFEQKLW  NGSYFNYDSG780
SSSNSKSIQA  DQLAGQWYTA  SSGLPPLFDE  SKIKSALRKV  YDFNVMKVKG  GKMGAVNGMH840
PNGKVDETCM  QSREIWTGVT  YGVASTMILA  GMEEEAFATA  EGIFQAGWSE  DGYGYWFQTP900
EAWTMDGHYR  SLIYMRPLSI  WGMQYALTLP  KAILDAPKIN  IMDRIHLSPL  NGGFPHNETG960
VRKIANKAKC  FGNSVFHCAC  980

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help