CAZyme3D

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Entry ID

Information for CAZyme ID: QHN17010.1

Basic Information

GenBank IDQHN17010.1
FamilyGH23
Sequence Length441
UniProt IDA0A857M9V7(100,100)Download
Average pLDDT?62.34
CAZy50 ID82283
CAZy50 RepYes, QHN17010.1
Structure ClusterSC_GH23_clus507
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID36821
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyGordoniaceae
GenusGordonia
SpeciesGordonia amarae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSPLFRKSRG  PSRRRISRRS  LAVGTGSVLV  GAMVLGAASS  SAHSTALDPV  AEQQPTVIAP60
AFEIAPGTAT  ALSGFAPPAL  TNITTGTGVA  PQFRTTVDLP  SGPLGIPGVV  LKAYKLAATR120
VGSESPQCKL  PWFLLAGIGR  IESNHAGNGS  VDAYGTTINP  IAGPVLDGTL  AGNQVIRDTD180
GGRIDGDAGH  DRAMGPMQFI  PSTWASWGSD  ANGDGKADPN  NVFDATYSAG  RYLCAGVTDI240
MNERNKIAAV  LRYNHSMEYV  ANVLSWAVAY  STGVMPTNPI  PEPKRPTSST  SSSKKRKPGH300
SRDRSASESR  KPGDPSVPST  APSTSTTPTQ  QCVVRGVCLP  PGITIPGLPI  PGQQQKKTPV360
PGRPSVTTTT  ISPAPKAPGA  RQPERPGTTG  SPKRSAVRQQ  SVPEKTVASQ  RAGAPKKAST420
PAKNRIPTTT  IPTTTITLAP  R441

Predicted 3D structure by AlphaFold2 with pLDDT = 62.34 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSPLFRKSRG  PSRRRISRRS  LAVGTGSVLV  GAMVLGAASS  SAHSTALDPV  AEQQPTVIAP60
AFEIAPGTAT  ALSGFAPPAL  TNITTGTGVA  PQFRTTVDLP  SGPLGIPGVV  LKAYKLAATR120
VGSESPQCKL  PWFLLAGIGR  IESNHAGNGS  VDAYGTTINP  IAGPVLDGTL  AGNQVIRDTD180
GGRIDGDAGH  DRAMGPMQFI  PSTWASWGSD  ANGDGKADPN  NVFDATYSAG  RYLCAGVTDI240
MNERNKIAAV  LRYNHSMEYV  ANVLSWAVAY  STGVMPTNPI  PEPKRPTSST  SSSKKRKPGH300
SRDRSASESR  KPGDPSVPST  APSTSTTPTQ  QCVVRGVCLP  PGITIPGLPI  PGQQQKKTPV360
PGRPSVTTTT  ISPAPKAPGA  RQPERPGTTG  SPKRSAVRQQ  SVPEKTVASQ  RAGAPKKAST420
PAKNRIPTTT  IPTTTITLAP  R441

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(131-271)

MSPLFRKSRG  PSRRRISRRS  LAVGTGSVLV  GAMVLGAASS  SAHSTALDPV  AEQQPTVIAP60
AFEIAPGTAT  ALSGFAPPAL  TNITTGTGVA  PQFRTTVDLP  SGPLGIPGVV  LKAYKLAATR120
VGSESPQCKL  PWFLLAGIGR  IESNHAGNGS  VDAYGTTINP  IAGPVLDGTL  AGNQVIRDTD180
GGRIDGDAGH  DRAMGPMQFI  PSTWASWGSD  ANGDGKADPN  NVFDATYSAG  RYLCAGVTDI240
MNERNKIAAV  LRYNHSMEYV  ANVLSWAVAY  STGVMPTNPI  PEPKRPTSST  SSSKKRKPGH300
SRDRSASESR  KPGDPSVPST  APSTSTTPTQ  QCVVRGVCLP  PGITIPGLPI  PGQQQKKTPV360
PGRPSVTTTT  ISPAPKAPGA  RQPERPGTTG  SPKRSAVRQQ  SVPEKTVASQ  RAGAPKKAST420
PAKNRIPTTT  IPTTTITLAP  R441

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help