Information for CAZyme ID: QHN17010.1
Basic Information
GenBank ID | QHN17010.1 |
Family | GH23 |
Sequence Length | 441 |
UniProt ID | A0A857M9V7(100,100)![]() |
Average pLDDT? | 62.34 |
CAZy50 ID | 82283 |
CAZy50 Rep | Yes, QHN17010.1 |
Structure Cluster | SC_GH23_clus507 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 36821 |
Kingdom | Bacteria |
Phylum | Actinomycetota |
Class | Actinomycetes |
Order | Mycobacteriales |
Family | Gordoniaceae |
Genus | Gordonia |
Species | Gordonia amarae |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MSPLFRKSRG PSRRRISRRS LAVGTGSVLV GAMVLGAASS SAHSTALDPV AEQQPTVIAP | 60 |
AFEIAPGTAT ALSGFAPPAL TNITTGTGVA PQFRTTVDLP SGPLGIPGVV LKAYKLAATR | 120 |
VGSESPQCKL PWFLLAGIGR IESNHAGNGS VDAYGTTINP IAGPVLDGTL AGNQVIRDTD | 180 |
GGRIDGDAGH DRAMGPMQFI PSTWASWGSD ANGDGKADPN NVFDATYSAG RYLCAGVTDI | 240 |
MNERNKIAAV LRYNHSMEYV ANVLSWAVAY STGVMPTNPI PEPKRPTSST SSSKKRKPGH | 300 |
SRDRSASESR KPGDPSVPST APSTSTTPTQ QCVVRGVCLP PGITIPGLPI PGQQQKKTPV | 360 |
PGRPSVTTTT ISPAPKAPGA RQPERPGTTG SPKRSAVRQQ SVPEKTVASQ RAGAPKKAST | 420 |
PAKNRIPTTT IPTTTITLAP R | 441 |
Predicted 3D structure by AlphaFold2 with pLDDT = 62.34 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MSPLFRKSRG PSRRRISRRS LAVGTGSVLV GAMVLGAASS SAHSTALDPV AEQQPTVIAP | 60 |
AFEIAPGTAT ALSGFAPPAL TNITTGTGVA PQFRTTVDLP SGPLGIPGVV LKAYKLAATR | 120 |
VGSESPQCKL PWFLLAGIGR IESNHAGNGS VDAYGTTINP IAGPVLDGTL AGNQVIRDTD | 180 |
GGRIDGDAGH DRAMGPMQFI PSTWASWGSD ANGDGKADPN NVFDATYSAG RYLCAGVTDI | 240 |
MNERNKIAAV LRYNHSMEYV ANVLSWAVAY STGVMPTNPI PEPKRPTSST SSSKKRKPGH | 300 |
SRDRSASESR KPGDPSVPST APSTSTTPTQ QCVVRGVCLP PGITIPGLPI PGQQQKKTPV | 360 |
PGRPSVTTTT ISPAPKAPGA RQPERPGTTG SPKRSAVRQQ SVPEKTVASQ RAGAPKKAST | 420 |
PAKNRIPTTT IPTTTITLAP R | 441 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.