CAZyme3D

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Entry ID

Information for CAZyme ID: QGT33403.1

Basic Information

GenBank IDQGT33403.1
FamilyCBM14
Sequence Length219
UniProt IDA0A650DLI4(100,100)Download
Average pLDDT?72.69
CAZy50 ID177634
CAZy50 RepYes, QGT33403.1
Structure ClusterSC_CBM14_clus19
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID375433
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderHymenoptera
FamilyBraconidae
GenusMicroplitis
SpeciesMicroplitis mediator

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MINWRSVFIV  ACVEALVLFA  YSVNADGSSE  IYNGTRSSNN  NNHNNNNNNN  KVSKRAKPLD60
PEDDYYYYDD  VDERNNPTND  SPVVPPGFLS  PSVREYLDLG  KSIPGRPGTD  FPVLGKVPYT120
NFYCDDQEYP  GFFADVETRC  QAWHYCDIDG  RQATFLCPNG  TQFSQAVLVC  DWWFNVRCEL180
SPKLYAINAR  LYQKPTESPT  RPHRLITKEL  LENIFARRK219

Predicted 3D structure by AlphaFold2 with pLDDT = 72.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MINWRSVFIV  ACVEALVLFA  YSVNADGSSE  IYNGTRSSNN  NNHNNNNNNN  KVSKRAKPLD60
PEDDYYYYDD  VDERNNPTND  SPVVPPGFLS  PSVREYLDLG  KSIPGRPGTD  FPVLGKVPYT120
NFYCDDQEYP  GFFADVETRC  QAWHYCDIDG  RQATFLCPNG  TQFSQAVLVC  DWWFNVRCEL180
SPKLYAINAR  LYQKPTESPT  RPHRLITKEL  LENIFARRK219

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM14(131-178)

MINWRSVFIV  ACVEALVLFA  YSVNADGSSE  IYNGTRSSNN  NNHNNNNNNN  KVSKRAKPLD60
PEDDYYYYDD  VDERNNPTND  SPVVPPGFLS  PSVREYLDLG  KSIPGRPGTD  FPVLGKVPYT120
NFYCDDQEYP  GFFADVETRC  QAWHYCDIDG  RQATFLCPNG  TQFSQAVLVC  DWWFNVRCEL180
SPKLYAINAR  LYQKPTESPT  RPHRLITKEL  LENIFARRK219

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help