CAZyme3D

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Entry ID

Information for CAZyme ID: QGQ94798.1

Basic Information

GenBank IDQGQ94798.1
FamilyCBM27, GH5_7
Sequence Length1405
UniProt IDA0A6B8RHD4(100,100)Download
Average pLDDT?84.02
CAZy50 ID4864
CAZy50 RepYes, QGQ94798.1
Structure ClusterSC_CBM27_clus8, SC_GH5_clus153
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1778678
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus psychroresistens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSMLFKKSLS  LALCLILMLG  VFTFNLSVVN  ASGASGTYPT  QDLEYNFNDG  TTMSWDKDWG60
DPLVSLEHST  FMSDGNNTGA  LAAHVNFTGG  GFDNGNIGGW  LGSSQEVVDL  TQYKSIEYDL120
FIHEPDNLLG  VLKVETALNG  GLYEDLNDWS  EFNLAALNKV  TINGKVYGKI  HKKVSLKNAI180
NKALNKKLTI  RLAGAGVQYD  GIIYVDNVVI  HKTNNIVYDF  NDGTAMNWIP  AWGDALGTVT240
NSTNQGNLNE  GRLMVNTAFS  SGGWKEANVK  TILSGNSAVK  TDLSNFGKIE  YDVLIPNPTG300
FTGLLKVAAA  FNDPWGDISS  FETYDVTNQA  TVEINGITYA  KIHMVNSLTA  IANKSAVGEL360
VIRLASDNSS  YTGPIYLDNI  TVFALEDTSI  NIDSPTPFQD  LAGNVSIVCT  VATPELVSAS420
SVTVITATNH  VISLALNANG  KYEGTWNASL  EPEGFMKLTA  NLIASDNSTA  IKQTEVYIKN480
SKIEVDIVSP  TLASAVSNTY  EIKASVTNGD  ANPINSVELE  VYGSEAVKYY  KTDMSLNNGF540
YKANLDSTAF  TDGAYVLKIN  AKTANHTTSA  TTEIIIHNGS  GVGSIVAKHG  TQFSLDNKTF600
YFNGWNAYDL  SYKDDVTKNS  NDKAIIYTAD  GEKIELLIKK  NSVVSYKEQI  DRNILEAKKL660
GATVLRTWGY  NTENGNTHSF  YNSDWTFNED  QFKEFDYVME  SARRNGIKVI  ITLSNYWDDL720
GGIKKYTEHL  GLSSKLKFFT  EPSAKDLFKA  YIDKFTSRVN  TLTNIKYSDD  PTIFAWDLMN780
EPRMDKNEDN  TADKSLYDPN  GQKLGAWINE  MTTYTKTKDS  NHMVTVGAES  HGYRNPAANN840
EPWARTDEGF  GDDPISVLNQ  PDVDFLTFHP  YPNANWLRYT  RDQTRALIQG  IVNDGHAINK900
PVVMEEWNIQ  RNEAVRDPAN  GDATVEITDA  SYPAVRLELY  KDLLKTFREA  GGDGSNFWSI960
LVNEADAGFS  QTSYNPAYAV  ENDRLLNLAY  LDESKLMNAK  TGLNLSSSPG  TPTPTPAPTS1020
TPTAAVIDIS  HTSNNGSQFG  RNDSDQHKRY  QTFIATGMPK  VTAVDLRLKK  IGTASNLTVE1080
LFATSGGKPT  GTALASAQLT  ANAVSASFAA  VNVPISYAGL  VSGVKYAVVL  GQLTVSNADY1140
YEWAVENVNS  ALEFGMYSGT  TWLDNSNSGD  GSTKIYVASV  ATPTPTPTPT  PTPTPTPTPT1200
PTAIPAVITL  STEKAIVNTG  ESLVLTVKAS  HVTNLKGFDL  QVSYDKTLFE  LTAASLDGEF1260
VNAVNNETGF  LDYSDDRVNG  KVQVIGALLG  NAFKSGDVKF  LKLTFMAKTN  VDAKTGFTIL1320
NQSSLSDKNG  VISPTVTDIQ  KELVIANPDV  DHSNTVNISD  LIAVANLFMK  ISTDTGYLAI1380
CDLNKDGIIN  IFDIAYVGKV  ILHKN1405

Predicted 3D structure by AlphaFold2 with pLDDT = 84.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSMLFKKSLS  LALCLILMLG  VFTFNLSVVN  ASGASGTYPT  QDLEYNFNDG  TTMSWDKDWG60
DPLVSLEHST  FMSDGNNTGA  LAAHVNFTGG  GFDNGNIGGW  LGSSQEVVDL  TQYKSIEYDL120
FIHEPDNLLG  VLKVETALNG  GLYEDLNDWS  EFNLAALNKV  TINGKVYGKI  HKKVSLKNAI180
NKALNKKLTI  RLAGAGVQYD  GIIYVDNVVI  HKTNNIVYDF  NDGTAMNWIP  AWGDALGTVT240
NSTNQGNLNE  GRLMVNTAFS  SGGWKEANVK  TILSGNSAVK  TDLSNFGKIE  YDVLIPNPTG300
FTGLLKVAAA  FNDPWGDISS  FETYDVTNQA  TVEINGITYA  KIHMVNSLTA  IANKSAVGEL360
VIRLASDNSS  YTGPIYLDNI  TVFALEDTSI  NIDSPTPFQD  LAGNVSIVCT  VATPELVSAS420
SVTVITATNH  VISLALNANG  KYEGTWNASL  EPEGFMKLTA  NLIASDNSTA  IKQTEVYIKN480
SKIEVDIVSP  TLASAVSNTY  EIKASVTNGD  ANPINSVELE  VYGSEAVKYY  KTDMSLNNGF540
YKANLDSTAF  TDGAYVLKIN  AKTANHTTSA  TTEIIIHNGS  GVGSIVAKHG  TQFSLDNKTF600
YFNGWNAYDL  SYKDDVTKNS  NDKAIIYTAD  GEKIELLIKK  NSVVSYKEQI  DRNILEAKKL660
GATVLRTWGY  NTENGNTHSF  YNSDWTFNED  QFKEFDYVME  SARRNGIKVI  ITLSNYWDDL720
GGIKKYTEHL  GLSSKLKFFT  EPSAKDLFKA  YIDKFTSRVN  TLTNIKYSDD  PTIFAWDLMN780
EPRMDKNEDN  TADKSLYDPN  GQKLGAWINE  MTTYTKTKDS  NHMVTVGAES  HGYRNPAANN840
EPWARTDEGF  GDDPISVLNQ  PDVDFLTFHP  YPNANWLRYT  RDQTRALIQG  IVNDGHAINK900
PVVMEEWNIQ  RNEAVRDPAN  GDATVEITDA  SYPAVRLELY  KDLLKTFREA  GGDGSNFWSI960
LVNEADAGFS  QTSYNPAYAV  ENDRLLNLAY  LDESKLMNAK  TGLNLSSSPG  TPTPTPAPTS1020
TPTAAVIDIS  HTSNNGSQFG  RNDSDQHKRY  QTFIATGMPK  VTAVDLRLKK  IGTASNLTVE1080
LFATSGGKPT  GTALASAQLT  ANAVSASFAA  VNVPISYAGL  VSGVKYAVVL  GQLTVSNADY1140
YEWAVENVNS  ALEFGMYSGT  TWLDNSNSGD  GSTKIYVASV  ATPTPTPTPT  PTPTPTPTPT1200
PTAIPAVITL  STEKAIVNTG  ESLVLTVKAS  HVTNLKGFDL  QVSYDKTLFE  LTAASLDGEF1260
VNAVNNETGF  LDYSDDRVNG  KVQVIGALLG  NAFKSGDVKF  LKLTFMAKTN  VDAKTGFTIL1320
NQSSLSDKNG  VISPTVTDIQ  KELVIANPDV  DHSNTVNISD  LIAVANLFMK  ISTDTGYLAI1380
CDLNKDGIIN  IFDIAYVGKV  ILHKN1405

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM27(44-209)+CBM27(218-381)+GH5_7(648-959)+cohesin(1209-1319)

MSMLFKKSLS  LALCLILMLG  VFTFNLSVVN  ASGASGTYPT  QDLEYNFNDG  TTMSWDKDWG60
DPLVSLEHST  FMSDGNNTGA  LAAHVNFTGG  GFDNGNIGGW  LGSSQEVVDL  TQYKSIEYDL120
FIHEPDNLLG  VLKVETALNG  GLYEDLNDWS  EFNLAALNKV  TINGKVYGKI  HKKVSLKNAI180
NKALNKKLTI  RLAGAGVQYD  GIIYVDNVVI  HKTNNIVYDF  NDGTAMNWIP  AWGDALGTVT240
NSTNQGNLNE  GRLMVNTAFS  SGGWKEANVK  TILSGNSAVK  TDLSNFGKIE  YDVLIPNPTG300
FTGLLKVAAA  FNDPWGDISS  FETYDVTNQA  TVEINGITYA  KIHMVNSLTA  IANKSAVGEL360
VIRLASDNSS  YTGPIYLDNI  TVFALEDTSI  NIDSPTPFQD  LAGNVSIVCT  VATPELVSAS420
SVTVITATNH  VISLALNANG  KYEGTWNASL  EPEGFMKLTA  NLIASDNSTA  IKQTEVYIKN480
SKIEVDIVSP  TLASAVSNTY  EIKASVTNGD  ANPINSVELE  VYGSEAVKYY  KTDMSLNNGF540
YKANLDSTAF  TDGAYVLKIN  AKTANHTTSA  TTEIIIHNGS  GVGSIVAKHG  TQFSLDNKTF600
YFNGWNAYDL  SYKDDVTKNS  NDKAIIYTAD  GEKIELLIKK  NSVVSYKEQI  DRNILEAKKL660
GATVLRTWGY  NTENGNTHSF  YNSDWTFNED  QFKEFDYVME  SARRNGIKVI  ITLSNYWDDL720
GGIKKYTEHL  GLSSKLKFFT  EPSAKDLFKA  YIDKFTSRVN  TLTNIKYSDD  PTIFAWDLMN780
EPRMDKNEDN  TADKSLYDPN  GQKLGAWINE  MTTYTKTKDS  NHMVTVGAES  HGYRNPAANN840
EPWARTDEGF  GDDPISVLNQ  PDVDFLTFHP  YPNANWLRYT  RDQTRALIQG  IVNDGHAINK900
PVVMEEWNIQ  RNEAVRDPAN  GDATVEITDA  SYPAVRLELY  KDLLKTFREA  GGDGSNFWSI960
LVNEADAGFS  QTSYNPAYAV  ENDRLLNLAY  LDESKLMNAK  TGLNLSSSPG  TPTPTPAPTS1020
TPTAAVIDIS  HTSNNGSQFG  RNDSDQHKRY  QTFIATGMPK  VTAVDLRLKK  IGTASNLTVE1080
LFATSGGKPT  GTALASAQLT  ANAVSASFAA  VNVPISYAGL  VSGVKYAVVL  GQLTVSNADY1140
YEWAVENVNS  ALEFGMYSGT  TWLDNSNSGD  GSTKIYVASV  ATPTPTPTPT  PTPTPTPTPT1200
PTAIPAVITL  STEKAIVNTG  ESLVLTVKAS  HVTNLKGFDL  QVSYDKTLFE  LTAASLDGEF1260
VNAVNNETGF  LDYSDDRVNG  KVQVIGALLG  NAFKSGDVKF  LKLTFMAKTN  VDAKTGFTIL1320
NQSSLSDKNG  VISPTVTDIQ  KELVIANPDV  DHSNTVNISD  LIAVANLFMK  ISTDTGYLAI1380
CDLNKDGIIN  IFDIAYVGKV  ILHKN1405

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help