CAZyme3D

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Entry ID

Information for CAZyme ID: QGQ28390.1

Basic Information

GenBank IDQGQ28390.1
FamilyPL10_3
Sequence Length502
UniProt IDA0A517VIV1(90.3,96.6)Download
Average pLDDT?92.82
CAZy50 ID68406
CAZy50 RepYes, QGQ28390.1
Structure ClusterSC_PL10_clus3
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID122
KingdomBacteria
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusGimesia
SpeciesGimesia maris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MILCCLSYNY  CEKDLWLMSE  TRPLMRMCFL  FCISFVFFCV  IADDLPGADV  TDAAARQAMQ60
KATNYFTSQV  STEGGYLWLY  SQDLKEREGE  NQAPASRVWV  QPPGTPSVGE  AYLRAYQKTG120
EPYLLKAAKS  AAYALVNGQL  KSGGWNYYID  YEDRKSYQYR  VNGGGPKARN  TTTLDDNTTQ180
AALQFLILMD  QELKFQDQSI  HEAAMYALNA  LLKAQYPNGG  WPQRFDSPPD  PQEYPVIKAN240
YPESWPREFP  KKKYLNYYTF  NDNLIEDLVD  VMFLAHHVYQ  DERYQQAALK  AGDFIILAQM300
PEPQPAWAQQ  YNSQMQPAWA  RKFEPPAVTG  GESQGIIKTL  MQIYIYSGDK  KYLKPIPPAL360
AYLKKSELPD  GKLARFYELK  TNRPLYFTKK  YQLTYNDNDL  PTHYGFIIKS  GVDSLEGRYR420
RLLDDSPEKL  ASMRFPTHRV  RLTPSLTAKA  KSAIESLNSE  GAWLKQGDLN  ASGKENLRTI480
DTRVFIRNLN  TLADFVAAKQ  KD502

Predicted 3D structure by AlphaFold2 with pLDDT = 92.82 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MILCCLSYNY  CEKDLWLMSE  TRPLMRMCFL  FCISFVFFCV  IADDLPGADV  TDAAARQAMQ60
KATNYFTSQV  STEGGYLWLY  SQDLKEREGE  NQAPASRVWV  QPPGTPSVGE  AYLRAYQKTG120
EPYLLKAAKS  AAYALVNGQL  KSGGWNYYID  YEDRKSYQYR  VNGGGPKARN  TTTLDDNTTQ180
AALQFLILMD  QELKFQDQSI  HEAAMYALNA  LLKAQYPNGG  WPQRFDSPPD  PQEYPVIKAN240
YPESWPREFP  KKKYLNYYTF  NDNLIEDLVD  VMFLAHHVYQ  DERYQQAALK  AGDFIILAQM300
PEPQPAWAQQ  YNSQMQPAWA  RKFEPPAVTG  GESQGIIKTL  MQIYIYSGDK  KYLKPIPPAL360
AYLKKSELPD  GKLARFYELK  TNRPLYFTKK  YQLTYNDNDL  PTHYGFIIKS  GVDSLEGRYR420
RLLDDSPEKL  ASMRFPTHRV  RLTPSLTAKA  KSAIESLNSE  GAWLKQGDLN  ASGKENLRTI480
DTRVFIRNLN  TLADFVAAKQ  KD502

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL10_3(139-406)

MFETRQTMRM  YLLSCLSSVF  LFGFAEDLQS  AEVTDAAARK  AMQQATDYFT  SQVATEGGYL60
WKYSQDLKDR  EGENQAPASR  VWVQPPGTPS  VGEAYLRAYQ  KTREPYLLKA  AKATAYALVN120
GQLKSGGWNY  YIDFEDRKSY  QYRVNGGGPK  ARNTTTLDDN  TTQAALQFLI  LIDQELKFQD180
QSIHEAAMYA  LNALLKAQYP  NGGWPQRFDS  PPDPKDYPVI  KANYPESWPR  EFRKEKYLDY240
YTFNDNLIED  LVGVMFLAHH  VYQDERYQRA  ALKAGDFIIL  AQMPEPQPAW  AQQYNSQMQP300
AWARRFEPPA  VTGGESQGII  KTLIQIYIYT  GDKKYLKPIP  PALAYLKKSE  LPDGKLARFY360
ELKTNRPLYF  TKKYQLTYQD  NDLPTHYGFI  VNSSVDSLEG  RYRRLLDDSP  EKLASMRFPT420
RRVRLTPSLT  AKAKSAIDSL  NSEGAWLKQG  DLKASGKKNL  RTIDTRVFIQ  NLSTLADFVA480
AKQKD485

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help