CAZyme3D

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Entry ID

Information for CAZyme ID: QGN08121.1

Basic Information

GenBank IDQGN08121.1
FamilyCBM6, GH81
Sequence Length1245
UniProt IDA0A650A705(100,100)Download
Average pLDDT?85.87
CAZy50 ID7019
CAZy50 RepYes, QGN08121.1
Structure ClusterSC_CBM6_clus32, SC_GH81_clus10
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1380432
KingdomArchaea
PhylumEuryarchaeota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloarculaceae
GenusHalorhabdus
SpeciesHalorhabdus sp. CBA1104

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSDNTDTPSL  DLSRRTFVKG  VGAAGAAGAT  AGTVAAEVND  DDVVSVGSGS  FTTAIPAGYD60
YPSPPTPEYV  TENVSPPIPT  NDWWSGLLFG  TFSSGPVIGL  PYYSDPGENG  LTIKHPTAWA120
GDPAEQDTIV  ADWDNTPGLV  VGHQRVDEFE  DARVNDWGDW  HVQTRLGATA  NMWVDVTQAR180
GSPFLFAECI  GGPAELTLTD  AADEPAQDEQ  VSVFADQGNV  LGVTVEGEHY  DQHFGIFAPS240
SASWEGLGTA  TLTSGLGDGT  SLTVAVLPEA  STDLLSTFEE  YAYNHVVGTT  IDWEYVQTDD300
EGNPVSEVRT  TYSFETEAKP  ESTAEGTLTA  LFPHQWKYAE  EPFADVTYWS  PRGEMKVKTG360
TSFTTAHTYQ  GILPFEPTDG  TQDMAQLESY  VTGLMEDNDR  YEWPAPHSAY  WVGKDFYRNS420
VVAPIAQQTG  QTEAQEYFTT  AVTDRLEAWL  TAGDTSMGTE  AGQELFYYDD  ALGSLFEYPT480
DFGSVAAITD  HHFHYGYFVY  GAAEAARTNP  EWASEDNWGG  MVNRLIRDYA  NWERPDHDAA540
LDPAGDPKNA  FPFLRNFDVY  GGHSWAGGTV  GNPKGNNQES  SSEAVMAYAA  MIRWGEMTGD600
DALRDAGIFL  YTQETASVWD  YWFDPEDDSL  PDDWGANFDS  FGTAGPDFEY  ASNVWGGGYW660
RSLWWAASDP  IEVFGINWLP  IGGHSFYLGH  DTTYANANWQ  ALLDARDRHL  DGENPETGFL720
GGFEPTAWGY  RAMSNPSEAA  SLVDEALPVG  PGGNSSPFIY  NFVHFIEGAG  LVDTDVVGDV780
PFHQVFEDGE  TRTYVAYNAD  SAEITASFSD  GMELSVPAGE  IVVESTAEHY  EPDTAAPSTP840
SNLEATMTNS  YATELAWDGS  TDPSGIQYYA  VYLDGEEYTT  VGAPEVRIDE  LSRGTDYTIA900
VEAVDPFGNA  SPQATIDVTT  DSEDTAPPNA  PRNPQTGSPS  KTSIDLSWEA  ASDVGEGSGI960
DHYAVLVDGQ  EYTTTAETSV  ALDDLDPGTK  YTFGVVAVDG  AGNESRPVTV  DAQTVAEGAT1020
QRPFQGERRQ  IPGKIEAEHF  DQGGEGVSYH  ETSDVNQAGA  DYRDGPVDIG  DAGGGNYTIG1080
YIPEGEWLEY  SVTVESTAEY  DIIVSVASAE  GGGPIHIEVD  GEDVTGQIDV  PNTGSWTGYT1140
TVTGAKGVQL  AGGDHVVRVV  ADGGAWNFDW  MRFDGGGEET  PTETATPTAT  ETATETPESP1200
QQQSKTEPEP  TATTTSGPGF  TVVSMILGLF  GLSAYLLHND  DDETL1245

Predicted 3D structure by AlphaFold2 with pLDDT = 85.87 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSDNTDTPSL  DLSRRTFVKG  VGAAGAAGAT  AGTVAAEVND  DDVVSVGSGS  FTTAIPAGYD60
YPSPPTPEYV  TENVSPPIPT  NDWWSGLLFG  TFSSGPVIGL  PYYSDPGENG  LTIKHPTAWA120
GDPAEQDTIV  ADWDNTPGLV  VGHQRVDEFE  DARVNDWGDW  HVQTRLGATA  NMWVDVTQAR180
GSPFLFAECI  GGPAELTLTD  AADEPAQDEQ  VSVFADQGNV  LGVTVEGEHY  DQHFGIFAPS240
SASWEGLGTA  TLTSGLGDGT  SLTVAVLPEA  STDLLSTFEE  YAYNHVVGTT  IDWEYVQTDD300
EGNPVSEVRT  TYSFETEAKP  ESTAEGTLTA  LFPHQWKYAE  EPFADVTYWS  PRGEMKVKTG360
TSFTTAHTYQ  GILPFEPTDG  TQDMAQLESY  VTGLMEDNDR  YEWPAPHSAY  WVGKDFYRNS420
VVAPIAQQTG  QTEAQEYFTT  AVTDRLEAWL  TAGDTSMGTE  AGQELFYYDD  ALGSLFEYPT480
DFGSVAAITD  HHFHYGYFVY  GAAEAARTNP  EWASEDNWGG  MVNRLIRDYA  NWERPDHDAA540
LDPAGDPKNA  FPFLRNFDVY  GGHSWAGGTV  GNPKGNNQES  SSEAVMAYAA  MIRWGEMTGD600
DALRDAGIFL  YTQETASVWD  YWFDPEDDSL  PDDWGANFDS  FGTAGPDFEY  ASNVWGGGYW660
RSLWWAASDP  IEVFGINWLP  IGGHSFYLGH  DTTYANANWQ  ALLDARDRHL  DGENPETGFL720
GGFEPTAWGY  RAMSNPSEAA  SLVDEALPVG  PGGNSSPFIY  NFVHFIEGAG  LVDTDVVGDV780
PFHQVFEDGE  TRTYVAYNAD  SAEITASFSD  GMELSVPAGE  IVVESTAEHY  EPDTAAPSTP840
SNLEATMTNS  YATELAWDGS  TDPSGIQYYA  VYLDGEEYTT  VGAPEVRIDE  LSRGTDYTIA900
VEAVDPFGNA  SPQATIDVTT  DSEDTAPPNA  PRNPQTGSPS  KTSIDLSWEA  ASDVGEGSGI960
DHYAVLVDGQ  EYTTTAETSV  ALDDLDPGTK  YTFGVVAVDG  AGNESRPVTV  DAQTVAEGAT1020
QRPFQGERRQ  IPGKIEAEHF  DQGGEGVSYH  ETSDVNQAGA  DYRDGPVDIG  DAGGGNYTIG1080
YIPEGEWLEY  SVTVESTAEY  DIIVSVASAE  GGGPIHIEVD  GEDVTGQIDV  PNTGSWTGYT1140
TVTGAKGVQL  AGGDHVVRVV  ADGGAWNFDW  MRFDGGGEET  PTETATPTAT  ETATETPESP1200
QQQSKTEPEP  TATTTSGPGF  TVVSMILGLF  GLSAYLLHND  DDETL1245

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH81(64-743)+CBM6(1037-1174)

MSDNTDTPSL  DLSRRTFVKG  VGAAGAAGAT  AGTVAAEVND  DDVVSVGSGS  FTTAIPAGYD60
YPSPPTPEYV  TENVSPPIPT  NDWWSGLLFG  TFSSGPVIGL  PYYSDPGENG  LTIKHPTAWA120
GDPAEQDTIV  ADWDNTPGLV  VGHQRVDEFE  DARVNDWGDW  HVQTRLGATA  NMWVDVTQAR180
GSPFLFAECI  GGPAELTLTD  AADEPAQDEQ  VSVFADQGNV  LGVTVEGEHY  DQHFGIFAPS240
SASWEGLGTA  TLTSGLGDGT  SLTVAVLPEA  STDLLSTFEE  YAYNHVVGTT  IDWEYVQTDD300
EGNPVSEVRT  TYSFETEAKP  ESTAEGTLTA  LFPHQWKYAE  EPFADVTYWS  PRGEMKVKTG360
TSFTTAHTYQ  GILPFEPTDG  TQDMAQLESY  VTGLMEDNDR  YEWPAPHSAY  WVGKDFYRNS420
VVAPIAQQTG  QTEAQEYFTT  AVTDRLEAWL  TAGDTSMGTE  AGQELFYYDD  ALGSLFEYPT480
DFGSVAAITD  HHFHYGYFVY  GAAEAARTNP  EWASEDNWGG  MVNRLIRDYA  NWERPDHDAA540
LDPAGDPKNA  FPFLRNFDVY  GGHSWAGGTV  GNPKGNNQES  SSEAVMAYAA  MIRWGEMTGD600
DALRDAGIFL  YTQETASVWD  YWFDPEDDSL  PDDWGANFDS  FGTAGPDFEY  ASNVWGGGYW660
RSLWWAASDP  IEVFGINWLP  IGGHSFYLGH  DTTYANANWQ  ALLDARDRHL  DGENPETGFL720
GGFEPTAWGY  RAMSNPSEAA  SLVDEALPVG  PGGNSSPFIY  NFVHFIEGAG  LVDTDVVGDV780
PFHQVFEDGE  TRTYVAYNAD  SAEITASFSD  GMELSVPAGE  IVVESTAEHY  EPDTAAPSTP840
SNLEATMTNS  YATELAWDGS  TDPSGIQYYA  VYLDGEEYTT  VGAPEVRIDE  LSRGTDYTIA900
VEAVDPFGNA  SPQATIDVTT  DSEDTAPPNA  PRNPQTGSPS  KTSIDLSWEA  ASDVGEGSGI960
DHYAVLVDGQ  EYTTTAETSV  ALDDLDPGTK  YTFGVVAVDG  AGNESRPVTV  DAQTVAEGAT1020
QRPFQGERRQ  IPGKIEAEHF  DQGGEGVSYH  ETSDVNQAGA  DYRDGPVDIG  DAGGGNYTIG1080
YIPEGEWLEY  SVTVESTAEY  DIIVSVASAE  GGGPIHIEVD  GEDVTGQIDV  PNTGSWTGYT1140
TVTGAKGVQL  AGGDHVVRVV  ADGGAWNFDW  MRFDGGGEET  PTETATPTAT  ETATETPESP1200
QQQSKTEPEP  TATTTSGPGF  TVVSMILGLF  GLSAYLLHND  DDETL1245

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help