CAZyme3D

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Entry ID

Information for CAZyme ID: QGA23305.1

Basic Information

GenBank IDQGA23305.1
FamilyGH2
Sequence Length807
UniProt IDA0A396MDB4(100,100)Download
Average pLDDT?93.18
CAZy50 ID26635
CAZy50 RepYes, QGA23305.1
Structure ClusterSC_GH2_clus95
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2662363
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes sp. dk3624

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKNRILGFC  LSQLLLLGTV  ASASGATAPA  APVSLDGEWE  LSYWPQPEKA  VTDPAALSGI60
EVKTIPAKVP  GNVELDLLAA  GLIDDPMIGA  NVNKLRAWEG  YQWCYTRRFD  APKLEPGQRA120
ELWFGGIDCL  ADVWVNGKHA  GSSADMLIER  SFDVTDLIEQ  GGSNTVQVII  RPVVLGAQDH180
LLGSFSMGNF  ATEESVYIRK  APHMYGWDIM  PRLVSAGLWR  GVELRTLNPA  RFTDVNWVTT240
HVDTASRNVS  LFVDFQTRLP  FDQYDKAKVR  FTLTRDGKEA  YRGEQVLFAH  AGRIVVNLEK300
ADLWWPRGYG  EPALYEAKGE  LIGADGQVLD  TDVKRIGLRI  VQLDLSDIHL  PDERGKFCFI360
VNGEKIFVRG  TNWVPLDALH  SRDAAQYESA  MKLVTDANCN  MVRCWGGNVY  EDTRFFDLCD420
ENGILVWQDF  AMGCSFYPQR  ADFLDQLREE  VTSVVLKLRN  HPSLALWAGN  NEDDANLFWS480
RLQPFHLDPN  RDQVSRHVIP  EVLYEFDPTR  PYLPSSPYYS  EAVWEKGSLE  QYLPENHLWG540
PRGYYKDKFY  TTAPCTFVSE  IGYHGCPNRS  SIEKMMTKQG  VYPWTEGRKW  NDEWITKSTR600
RYEAWGPTMD  RNNLMLNQVN  ILFGSVPDDL  DDFVFASQSV  QAEAMKYFVE  MWRSRKFERT660
GIIWWNVRDG  WPIISDAVVD  YYGSKKLAYY  FLQNVQKNVC  LLINDPVDGA  YPLVAVNDTR720
LPAEGTVTVT  DVATGKEVFK  GSYNVGPNGR  QCVSNLPVMK  GQGMLQIRYD  ANGESCSNHF780
LYGEPPYKLK  EYKGWLDKTK  MYTNKDK807

Predicted 3D structure by AlphaFold2 with pLDDT = 93.18 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKNRILGFC  LSQLLLLGTV  ASASGATAPA  APVSLDGEWE  LSYWPQPEKA  VTDPAALSGI60
EVKTIPAKVP  GNVELDLLAA  GLIDDPMIGA  NVNKLRAWEG  YQWCYTRRFD  APKLEPGQRA120
ELWFGGIDCL  ADVWVNGKHA  GSSADMLIER  SFDVTDLIEQ  GGSNTVQVII  RPVVLGAQDH180
LLGSFSMGNF  ATEESVYIRK  APHMYGWDIM  PRLVSAGLWR  GVELRTLNPA  RFTDVNWVTT240
HVDTASRNVS  LFVDFQTRLP  FDQYDKAKVR  FTLTRDGKEA  YRGEQVLFAH  AGRIVVNLEK300
ADLWWPRGYG  EPALYEAKGE  LIGADGQVLD  TDVKRIGLRI  VQLDLSDIHL  PDERGKFCFI360
VNGEKIFVRG  TNWVPLDALH  SRDAAQYESA  MKLVTDANCN  MVRCWGGNVY  EDTRFFDLCD420
ENGILVWQDF  AMGCSFYPQR  ADFLDQLREE  VTSVVLKLRN  HPSLALWAGN  NEDDANLFWS480
RLQPFHLDPN  RDQVSRHVIP  EVLYEFDPTR  PYLPSSPYYS  EAVWEKGSLE  QYLPENHLWG540
PRGYYKDKFY  TTAPCTFVSE  IGYHGCPNRS  SIEKMMTKQG  VYPWTEGRKW  NDEWITKSTR600
RYEAWGPTMD  RNNLMLNQVN  ILFGSVPDDL  DDFVFASQSV  QAEAMKYFVE  MWRSRKFERT660
GIIWWNVRDG  WPIISDAVVD  YYGSKKLAYY  FLQNVQKNVC  LLINDPVDGA  YPLVAVNDTR720
LPAEGTVTVT  DVATGKEVFK  GSYNVGPNGR  QCVSNLPVMK  GQGMLQIRYD  ANGESCSNHF780
LYGEPPYKLK  EYKGWLDKTK  MYTNKDK807

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(33-749)

MKKNRILGFC  LSQLLLLGTV  ASASGATAPA  APVSLDGEWE  LSYWPQPEKA  VTDPAALSGI60
EVKTIPAKVP  GNVELDLLAA  GLIDDPMIGA  NVNKLRAWEG  YQWCYTRRFD  APKLEPGQRA120
ELWFGGIDCL  ADVWVNGKHA  GSSADMLIER  SFDVTDLIEQ  GGSNTVQVII  RPVVLGAQDH180
LLGSFSMGNF  ATEESVYIRK  APHMYGWDIM  PRLVSAGLWR  GVELRTLNPA  RFTDVNWVTT240
HVDTASRNVS  LFVDFQTRLP  FDQYDKAKVR  FTLTRDGKEA  YRGEQVLFAH  AGRIVVNLEK300
ADLWWPRGYG  EPALYEAKGE  LIGADGQVLD  TDVKRIGLRI  VQLDLSDIHL  PDERGKFCFI360
VNGEKIFVRG  TNWVPLDALH  SRDAAQYESA  MKLVTDANCN  MVRCWGGNVY  EDTRFFDLCD420
ENGILVWQDF  AMGCSFYPQR  ADFLDQLREE  VTSVVLKLRN  HPSLALWAGN  NEDDANLFWS480
RLQPFHLDPN  RDQVSRHVIP  EVLYEFDPTR  PYLPSSPYYS  EAVWEKGSLE  QYLPENHLWG540
PRGYYKDKFY  TTAPCTFVSE  IGYHGCPNRS  SIEKMMTKQG  VYPWTEGRKW  NDEWITKSTR600
RYEAWGPTMD  RNNLMLNQVN  ILFGSVPDDL  DDFVFASQSV  QAEAMKYFVE  MWRSRKFERT660
GIIWWNVRDG  WPIISDAVVD  YYGSKKLAYY  FLQNVQKNVC  LLINDPVDGA  YPLVAVNDTR720
LPAEGTVTVT  DVATGKEVFK  GSYNVGPNGR  QCVSNLPVMK  GQGMLQIRYD  ANGESCSNHF780
LYGEPPYKLK  EYKGWLDKTK  MYTNKDK807

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help