Information for CAZyme ID: QGA23305.1
Basic Information
GenBank ID | QGA23305.1 |
Family | GH2 |
Sequence Length | 807 |
UniProt ID | A0A396MDB4(100,100)![]() |
Average pLDDT? | 93.18 |
CAZy50 ID | 26635 |
CAZy50 Rep | Yes, QGA23305.1 |
Structure Cluster | SC_GH2_clus95 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2662363 |
Kingdom | Bacteria |
Phylum | Bacteroidota |
Class | Bacteroidia |
Order | Bacteroidales |
Family | Rikenellaceae |
Genus | Alistipes |
Species | Alistipes sp. dk3624 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MKKNRILGFC LSQLLLLGTV ASASGATAPA APVSLDGEWE LSYWPQPEKA VTDPAALSGI | 60 |
EVKTIPAKVP GNVELDLLAA GLIDDPMIGA NVNKLRAWEG YQWCYTRRFD APKLEPGQRA | 120 |
ELWFGGIDCL ADVWVNGKHA GSSADMLIER SFDVTDLIEQ GGSNTVQVII RPVVLGAQDH | 180 |
LLGSFSMGNF ATEESVYIRK APHMYGWDIM PRLVSAGLWR GVELRTLNPA RFTDVNWVTT | 240 |
HVDTASRNVS LFVDFQTRLP FDQYDKAKVR FTLTRDGKEA YRGEQVLFAH AGRIVVNLEK | 300 |
ADLWWPRGYG EPALYEAKGE LIGADGQVLD TDVKRIGLRI VQLDLSDIHL PDERGKFCFI | 360 |
VNGEKIFVRG TNWVPLDALH SRDAAQYESA MKLVTDANCN MVRCWGGNVY EDTRFFDLCD | 420 |
ENGILVWQDF AMGCSFYPQR ADFLDQLREE VTSVVLKLRN HPSLALWAGN NEDDANLFWS | 480 |
RLQPFHLDPN RDQVSRHVIP EVLYEFDPTR PYLPSSPYYS EAVWEKGSLE QYLPENHLWG | 540 |
PRGYYKDKFY TTAPCTFVSE IGYHGCPNRS SIEKMMTKQG VYPWTEGRKW NDEWITKSTR | 600 |
RYEAWGPTMD RNNLMLNQVN ILFGSVPDDL DDFVFASQSV QAEAMKYFVE MWRSRKFERT | 660 |
GIIWWNVRDG WPIISDAVVD YYGSKKLAYY FLQNVQKNVC LLINDPVDGA YPLVAVNDTR | 720 |
LPAEGTVTVT DVATGKEVFK GSYNVGPNGR QCVSNLPVMK GQGMLQIRYD ANGESCSNHF | 780 |
LYGEPPYKLK EYKGWLDKTK MYTNKDK | 807 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.18 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MKKNRILGFC LSQLLLLGTV ASASGATAPA APVSLDGEWE LSYWPQPEKA VTDPAALSGI | 60 |
EVKTIPAKVP GNVELDLLAA GLIDDPMIGA NVNKLRAWEG YQWCYTRRFD APKLEPGQRA | 120 |
ELWFGGIDCL ADVWVNGKHA GSSADMLIER SFDVTDLIEQ GGSNTVQVII RPVVLGAQDH | 180 |
LLGSFSMGNF ATEESVYIRK APHMYGWDIM PRLVSAGLWR GVELRTLNPA RFTDVNWVTT | 240 |
HVDTASRNVS LFVDFQTRLP FDQYDKAKVR FTLTRDGKEA YRGEQVLFAH AGRIVVNLEK | 300 |
ADLWWPRGYG EPALYEAKGE LIGADGQVLD TDVKRIGLRI VQLDLSDIHL PDERGKFCFI | 360 |
VNGEKIFVRG TNWVPLDALH SRDAAQYESA MKLVTDANCN MVRCWGGNVY EDTRFFDLCD | 420 |
ENGILVWQDF AMGCSFYPQR ADFLDQLREE VTSVVLKLRN HPSLALWAGN NEDDANLFWS | 480 |
RLQPFHLDPN RDQVSRHVIP EVLYEFDPTR PYLPSSPYYS EAVWEKGSLE QYLPENHLWG | 540 |
PRGYYKDKFY TTAPCTFVSE IGYHGCPNRS SIEKMMTKQG VYPWTEGRKW NDEWITKSTR | 600 |
RYEAWGPTMD RNNLMLNQVN ILFGSVPDDL DDFVFASQSV QAEAMKYFVE MWRSRKFERT | 660 |
GIIWWNVRDG WPIISDAVVD YYGSKKLAYY FLQNVQKNVC LLINDPVDGA YPLVAVNDTR | 720 |
LPAEGTVTVT DVATGKEVFK GSYNVGPNGR QCVSNLPVMK GQGMLQIRYD ANGESCSNHF | 780 |
LYGEPPYKLK EYKGWLDKTK MYTNKDK | 807 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.