Information for CAZyme ID: QGA22783.1
Basic Information
| GenBank ID | QGA22783.1 |
| Family | GH78 |
| Sequence Length | 924 |
| UniProt ID | A0A396M830(99.8,100) |
| Average pLDDT? | 94.09 |
| CAZy50 ID | 17995 |
| CAZy50 Rep | Yes, QGA22783.1 |
| Structure Cluster | SC_GH78_clus25 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 2662363 |
| Kingdom | Bacteria |
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Rikenellaceae |
| Genus | Alistipes |
| Species | Alistipes sp. dk3624 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MLWRPDNHLP MKKLLLSALL LLTGSLFANE RIARLRCEEM TDPIGIDVLQ PRLSWELESD | 60 |
| RRGVLQTAYR ILVATDKTLL DRDQGDMWDS GEIESDATSG IKYAGKPLQR NSYYYWKVKA | 120 |
| NTNKGETAWS EPALWQVGLL QFQDWVGQWI GFDRRFPWDG DPQGSRLSAR YFRKEFDCDK | 180 |
| EIRSATAYII GLGFYELRIN GRKIGDRVLA PVQTEFTKNV KYNAFDVTDA LKRGRNAIGI | 240 |
| VLGNGMYFTM QQFQQAFKIK NFGYPKVLFN LAITYADGSS RVIFTNDSWK GTADGPIRAN | 300 |
| NLYDGEEYDA TREFPGWDAP GFDDGGWLQA EFVQEPGGTY EAQTTDPMKV VKELAPVSVT | 360 |
| EKTDGRFIVD FGQNLTGWMR FSVRGARGQT VRLRYAESLD ENGELFTANL RSAKAEGLYT | 420 |
| LRGGERETYE PAFTYYGFRF VEVSGYPGQC DPSDFTACMV SDDMRTVGSF KTSDELLNRI | 480 |
| YRNAWWGIAG NYKGMPVDCP QRNEKQPWLG DRGVAALGEN FVFDNAKLYR KLLDDLKRAQ | 540 |
| KADGSLPDLA PDFWRYFSDN MTWPGVMLII ADMLYTQTGD LSAVSDHYDA MKKWLAYMKG | 600 |
| RYMTAEYIVS RDVYGDWCAP PSTAEAGKGL SGNVKKPNPL LSTAYYYHFT GLMQKFAELT | 660 |
| GRPQDKAYYA ELGENIKNGF NRRFYRSEDG YYDNGELTSN LLPVAFGMVP AEELPRVTAY | 720 |
| VGNLVEVKNR GHLSTGVIGT QWLMKTLSGI GRPDLALGIA LKKTYPSWGY MITHGATTIW | 780 |
| ELWNFDTAAP DMNSQNHVMM LGDLLVWFYE NLAGIRTDPA KPAFRRIVMN PDFPEGLDFV | 840 |
| EASHHSVSGK IESRWRRTKR KKTEWNIRIP ANCSAEVHFP AAAREKITES GHTVAADDEN | 900 |
| IRYRGTVNGK QVFEVLSGEY SFVF | 924 |
Predicted 3D structure by AlphaFold2 with pLDDT = 94.09 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MLWRPDNHLP MKKLLLSALL LLTGSLFANE RIARLRCEEM TDPIGIDVLQ PRLSWELESD | 60 |
| RRGVLQTAYR ILVATDKTLL DRDQGDMWDS GEIESDATSG IKYAGKPLQR NSYYYWKVKA | 120 |
| NTNKGETAWS EPALWQVGLL QFQDWVGQWI GFDRRFPWDG DPQGSRLSAR YFRKEFDCDK | 180 |
| EIRSATAYII GLGFYELRIN GRKIGDRVLA PVQTEFTKNV KYNAFDVTDA LKRGRNAIGI | 240 |
| VLGNGMYFTM QQFQQAFKIK NFGYPKVLFN LAITYADGSS RVIFTNDSWK GTADGPIRAN | 300 |
| NLYDGEEYDA TREFPGWDAP GFDDGGWLQA EFVQEPGGTY EAQTTDPMKV VKELAPVSVT | 360 |
| EKTDGRFIVD FGQNLTGWMR FSVRGARGQT VRLRYAESLD ENGELFTANL RSAKAEGLYT | 420 |
| LRGGERETYE PAFTYYGFRF VEVSGYPGQC DPSDFTACMV SDDMRTVGSF KTSDELLNRI | 480 |
| YRNAWWGIAG NYKGMPVDCP QRNEKQPWLG DRGVAALGEN FVFDNAKLYR KLLDDLKRAQ | 540 |
| KADGSLPDLA PDFWRYFSDN MTWPGVMLII ADMLYTQTGD LSAVSDHYDA MKKWLAYMKG | 600 |
| RYMTAEYIVS RDVYGDWCAP PSTAEAGKGL SGNVKKPNPL LSTAYYYHFT GLMQKFAELT | 660 |
| GRPQDKAYYA ELGENIKNGF NRRFYRSEDG YYDNGELTSN LLPVAFGMVP AEELPRVTAY | 720 |
| VGNLVEVKNR GHLSTGVIGT QWLMKTLSGI GRPDLALGIA LKKTYPSWGY MITHGATTIW | 780 |
| ELWNFDTAAP DMNSQNHVMM LGDLLVWFYE NLAGIRTDPA KPAFRRIVMN PDFPEGLDFV | 840 |
| EASHHSVSGK IESRWRRTKR KKTEWNIRIP ANCSAEVHFP AAAREKITES GHTVAADDEN | 900 |
| IRYRGTVNGK QVFEVLSGEY SFVF | 924 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.