Information for CAZyme ID: QFY42341.1
Basic Information
GenBank ID | QFY42341.1 |
Family | GT35 |
Sequence Length | 865 |
UniProt ID | A0A5Q0BJF2(100,100)![]() |
Average pLDDT? | 91.88 |
CAZy50 ID | 21785 |
CAZy50 Rep | Yes, QFY42341.1 |
Structure Cluster | SC_GT35_clus3 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1808979 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Gammaproteobacteria |
Order | Methylococcales |
Family | Methylococcaceae |
Genus | Candidatus Methylospira |
Species | Candidatus Methylospira mobilis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MPIRTLIKSQ PKANFTDIRP LGKDAKNMAA DIHRYFNYTL GRDKYCKSAH YTYNALALAV | 60 |
RDRLMEGWKK THYAYRGESP RQTFYLSMEF LMGRTLGNAM LNLGLEEPIH KALHKFGLDL | 120 |
EELAEVEHDA GLGNGGLGRL AACFIDSCAT LQLPVIGYGL RYEYGMFRQR IDNGYQAEEP | 180 |
DHWLRAGNVW ELERPELTVR VHFYGHTETY ADHAHHRRLR WVETQDVLVV PYDIPVPGYR | 240 |
NDTVNTLRLW KTVATDEFDL NEFNAGDYAG SVAGKNSAEN ISMVLYPNDA SECGKELRLR | 300 |
QQYVLASASL QDVVRKWVIR HGHGEDFTHF AEQNCFQLND THPSIAVAEL MRILMDEHLL | 360 |
SWDAAWKITT STMAYTNHTL LPEALEKWSV GLMRYLLPRL MEIIFEINAR FLAEVAQNWP | 420 |
GDSERLARMS LIEEDGDQKV RMAYLAIVGS YSVNGVAELH SNLLKQGLFK DFYELWPDKF | 480 |
NNKTNGITPR RWLGGCNPKL AELITANIGD GWTHDLTELK KLAPLVDDAA FRERWRTVKR | 540 |
VNKQRLLETI HASFETVDAA SGASARSSSG EWEDSGSLGL HLTVGVDAMF DVQVKRIHEY | 600 |
KRQLLNVLHV IHLYDRIKHG EIANWTPRLV LFGGKAAPGY AMAKKIIKLI NNVAHIVNHD | 660 |
PATAGLLSVV FLPNYRVSAM EVIAAAADLS EQISTAGKEA SGTGNMKFMM NGALTMGTLD | 720 |
GANIEILEEV GGDNFFLFGL TAQQVEKLRP HYDPRHIIAD DDDFSRVMHL LESSYFNQFE | 780 |
PGIFDDIINV IKSPKDPWMT AADFPAYVQA QRHAAEAFLD VDRWTQMSIL NCAASGKFSS | 840 |
DRTIAEYNRD IWKLTPVKPV GDQEI | 865 |
Predicted 3D structure by AlphaFold2 with pLDDT = 91.88 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MPIRTLIKSQ PKANFTDIRP LGKDAKNMAA DIHRYFNYTL GRDKYCKSAH YTYNALALAV | 60 |
RDRLMEGWKK THYAYRGESP RQTFYLSMEF LMGRTLGNAM LNLGLEEPIH KALHKFGLDL | 120 |
EELAEVEHDA GLGNGGLGRL AACFIDSCAT LQLPVIGYGL RYEYGMFRQR IDNGYQAEEP | 180 |
DHWLRAGNVW ELERPELTVR VHFYGHTETY ADHAHHRRLR WVETQDVLVV PYDIPVPGYR | 240 |
NDTVNTLRLW KTVATDEFDL NEFNAGDYAG SVAGKNSAEN ISMVLYPNDA SECGKELRLR | 300 |
QQYVLASASL QDVVRKWVIR HGHGEDFTHF AEQNCFQLND THPSIAVAEL MRILMDEHLL | 360 |
SWDAAWKITT STMAYTNHTL LPEALEKWSV GLMRYLLPRL MEIIFEINAR FLAEVAQNWP | 420 |
GDSERLARMS LIEEDGDQKV RMAYLAIVGS YSVNGVAELH SNLLKQGLFK DFYELWPDKF | 480 |
NNKTNGITPR RWLGGCNPKL AELITANIGD GWTHDLTELK KLAPLVDDAA FRERWRTVKR | 540 |
VNKQRLLETI HASFETVDAA SGASARSSSG EWEDSGSLGL HLTVGVDAMF DVQVKRIHEY | 600 |
KRQLLNVLHV IHLYDRIKHG EIANWTPRLV LFGGKAAPGY AMAKKIIKLI NNVAHIVNHD | 660 |
PATAGLLSVV FLPNYRVSAM EVIAAAADLS EQISTAGKEA SGTGNMKFMM NGALTMGTLD | 720 |
GANIEILEEV GGDNFFLFGL TAQQVEKLRP HYDPRHIIAD DDDFSRVMHL LESSYFNQFE | 780 |
PGIFDDIINV IKSPKDPWMT AADFPAYVQA QRHAAEAFLD VDRWTQMSIL NCAASGKFSS | 840 |
DRTIAEYNRD IWKLTPVKPV GDQEI | 865 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.