CAZyme3D

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Entry ID

Information for CAZyme ID: QFY42341.1

Basic Information

GenBank IDQFY42341.1
FamilyGT35
Sequence Length865
UniProt IDA0A5Q0BJF2(100,100)Download
Average pLDDT?91.88
CAZy50 ID21785
CAZy50 RepYes, QFY42341.1
Structure ClusterSC_GT35_clus3
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1808979
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderMethylococcales
FamilyMethylococcaceae
GenusCandidatus Methylospira
SpeciesCandidatus Methylospira mobilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPIRTLIKSQ  PKANFTDIRP  LGKDAKNMAA  DIHRYFNYTL  GRDKYCKSAH  YTYNALALAV60
RDRLMEGWKK  THYAYRGESP  RQTFYLSMEF  LMGRTLGNAM  LNLGLEEPIH  KALHKFGLDL120
EELAEVEHDA  GLGNGGLGRL  AACFIDSCAT  LQLPVIGYGL  RYEYGMFRQR  IDNGYQAEEP180
DHWLRAGNVW  ELERPELTVR  VHFYGHTETY  ADHAHHRRLR  WVETQDVLVV  PYDIPVPGYR240
NDTVNTLRLW  KTVATDEFDL  NEFNAGDYAG  SVAGKNSAEN  ISMVLYPNDA  SECGKELRLR300
QQYVLASASL  QDVVRKWVIR  HGHGEDFTHF  AEQNCFQLND  THPSIAVAEL  MRILMDEHLL360
SWDAAWKITT  STMAYTNHTL  LPEALEKWSV  GLMRYLLPRL  MEIIFEINAR  FLAEVAQNWP420
GDSERLARMS  LIEEDGDQKV  RMAYLAIVGS  YSVNGVAELH  SNLLKQGLFK  DFYELWPDKF480
NNKTNGITPR  RWLGGCNPKL  AELITANIGD  GWTHDLTELK  KLAPLVDDAA  FRERWRTVKR540
VNKQRLLETI  HASFETVDAA  SGASARSSSG  EWEDSGSLGL  HLTVGVDAMF  DVQVKRIHEY600
KRQLLNVLHV  IHLYDRIKHG  EIANWTPRLV  LFGGKAAPGY  AMAKKIIKLI  NNVAHIVNHD660
PATAGLLSVV  FLPNYRVSAM  EVIAAAADLS  EQISTAGKEA  SGTGNMKFMM  NGALTMGTLD720
GANIEILEEV  GGDNFFLFGL  TAQQVEKLRP  HYDPRHIIAD  DDDFSRVMHL  LESSYFNQFE780
PGIFDDIINV  IKSPKDPWMT  AADFPAYVQA  QRHAAEAFLD  VDRWTQMSIL  NCAASGKFSS840
DRTIAEYNRD  IWKLTPVKPV  GDQEI865

Predicted 3D structure by AlphaFold2 with pLDDT = 91.88 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPIRTLIKSQ  PKANFTDIRP  LGKDAKNMAA  DIHRYFNYTL  GRDKYCKSAH  YTYNALALAV60
RDRLMEGWKK  THYAYRGESP  RQTFYLSMEF  LMGRTLGNAM  LNLGLEEPIH  KALHKFGLDL120
EELAEVEHDA  GLGNGGLGRL  AACFIDSCAT  LQLPVIGYGL  RYEYGMFRQR  IDNGYQAEEP180
DHWLRAGNVW  ELERPELTVR  VHFYGHTETY  ADHAHHRRLR  WVETQDVLVV  PYDIPVPGYR240
NDTVNTLRLW  KTVATDEFDL  NEFNAGDYAG  SVAGKNSAEN  ISMVLYPNDA  SECGKELRLR300
QQYVLASASL  QDVVRKWVIR  HGHGEDFTHF  AEQNCFQLND  THPSIAVAEL  MRILMDEHLL360
SWDAAWKITT  STMAYTNHTL  LPEALEKWSV  GLMRYLLPRL  MEIIFEINAR  FLAEVAQNWP420
GDSERLARMS  LIEEDGDQKV  RMAYLAIVGS  YSVNGVAELH  SNLLKQGLFK  DFYELWPDKF480
NNKTNGITPR  RWLGGCNPKL  AELITANIGD  GWTHDLTELK  KLAPLVDDAA  FRERWRTVKR540
VNKQRLLETI  HASFETVDAA  SGASARSSSG  EWEDSGSLGL  HLTVGVDAMF  DVQVKRIHEY600
KRQLLNVLHV  IHLYDRIKHG  EIANWTPRLV  LFGGKAAPGY  AMAKKIIKLI  NNVAHIVNHD660
PATAGLLSVV  FLPNYRVSAM  EVIAAAADLS  EQISTAGKEA  SGTGNMKFMM  NGALTMGTLD720
GANIEILEEV  GGDNFFLFGL  TAQQVEKLRP  HYDPRHIIAD  DDDFSRVMHL  LESSYFNQFE780
PGIFDDIINV  IKSPKDPWMT  AADFPAYVQA  QRHAAEAFLD  VDRWTQMSIL  NCAASGKFSS840
DRTIAEYNRD  IWKLTPVKPV  GDQEI865

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT35(112-854)

MPIRTLIKSQ  PKANFTDIRP  LGKDAKNMAA  DIHRYFNYTL  GRDKYCKSAH  YTYNALALAV60
RDRLMEGWKK  THYAYRGESP  RQTFYLSMEF  LMGRTLGNAM  LNLGLEEPIH  KALHKFGLDL120
EELAEVEHDA  GLGNGGLGRL  AACFIDSCAT  LQLPVIGYGL  RYEYGMFRQR  IDNGYQAEEP180
DHWLRAGNVW  ELERPELTVR  VHFYGHTETY  ADHAHHRRLR  WVETQDVLVV  PYDIPVPGYR240
NDTVNTLRLW  KTVATDEFDL  NEFNAGDYAG  SVAGKNSAEN  ISMVLYPNDA  SECGKELRLR300
QQYVLASASL  QDVVRKWVIR  HGHGEDFTHF  AEQNCFQLND  THPSIAVAEL  MRILMDEHLL360
SWDAAWKITT  STMAYTNHTL  LPEALEKWSV  GLMRYLLPRL  MEIIFEINAR  FLAEVAQNWP420
GDSERLARMS  LIEEDGDQKV  RMAYLAIVGS  YSVNGVAELH  SNLLKQGLFK  DFYELWPDKF480
NNKTNGITPR  RWLGGCNPKL  AELITANIGD  GWTHDLTELK  KLAPLVDDAA  FRERWRTVKR540
VNKQRLLETI  HASFETVDAA  SGASARSSSG  EWEDSGSLGL  HLTVGVDAMF  DVQVKRIHEY600
KRQLLNVLHV  IHLYDRIKHG  EIANWTPRLV  LFGGKAAPGY  AMAKKIIKLI  NNVAHIVNHD660
PATAGLLSVV  FLPNYRVSAM  EVIAAAADLS  EQISTAGKEA  SGTGNMKFMM  NGALTMGTLD720
GANIEILEEV  GGDNFFLFGL  TAQQVEKLRP  HYDPRHIIAD  DDDFSRVMHL  LESSYFNQFE780
PGIFDDIINV  IKSPKDPWMT  AADFPAYVQA  QRHAAEAFLD  VDRWTQMSIL  NCAASGKFSS840
DRTIAEYNRD  IWKLTPVKPV  GDQEI865

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help