Information for CAZyme ID: QFT54545.1
Basic Information
GenBank ID | QFT54545.1 |
Family | CBM2, GH5_2 |
Sequence Length | 593 |
UniProt ID | A0A5P9EVE1(100,100)![]() |
Average pLDDT? | 77.79 |
CAZy50 ID | 53312 |
CAZy50 Rep | Yes, QFT54545.1 |
Structure Cluster | SC_CBM2_clus17, SC_CBM2_clus2, SC_GH5_clus134 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 2587856 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Gammaproteobacteria |
Order | Cellvibrionales |
Family | Microbulbiferaceae |
Genus | Microbulbifer |
Species | Microbulbifer sp. THAF38 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MLKVKRKNKS LQVILALSIG FSAGISNIHS VFAASDSNPV GYFGEMQVEG NKINGSKTGE | 60 |
PMQVKGMSFF WSNWTTYYNS ETVDRMVDEF QVEILRASYG VDDNGSPYDS DEDKIRTVVE | 120 |
AAIDRGVYII IDWHTHGAHN NVDAAKEFFA RMAMDYGSYD NVIFEIYNEP TYVSWSVVKD | 180 |
YAEEVISEIR KHSDNLVVVG SPTWSQDVGA AANDRINDEN VAYSLHFYAG THFSSLRDKA | 240 |
DYALSQGVAL FVTEWGSVNA DGNGSINYDS TGDWLAWMDE NEISWANWAI NDKAESSSIF | 300 |
NSDGSVTETG SFLKSIFESA VPGRIWDDAG IDGGTIGDDD VDSGNEGAGN TGSANGEEGG | 360 |
EADNGSGGAI DGENDNVDLV SGSSVGFSKA SDWGAGFNGS FTINNTGSSD IEGWVLEFDF | 420 |
DGQINSFWTA QIVSHSGNHY VVKPHDWNST VNAGKSLDLG FTATGGQTVT NITLGGNSDV | 480 |
GQSTGNTNEG DTVVGATSLA PIVEFSVSKD WGAGFNGEFT IKNTGSTDLS GWTLEFDYDG | 540 |
QIDSFWTAKI ISHSEGHYVV KPLDWNSTIK PGDSLKLGFT ATGSKNVSNS TLK | 593 |
Predicted 3D structure by AlphaFold2 with pLDDT = 77.79 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MLKVKRKNKS LQVILALSIG FSAGISNIHS VFAASDSNPV GYFGEMQVEG NKINGSKTGE | 60 |
PMQVKGMSFF WSNWTTYYNS ETVDRMVDEF QVEILRASYG VDDNGSPYDS DEDKIRTVVE | 120 |
AAIDRGVYII IDWHTHGAHN NVDAAKEFFA RMAMDYGSYD NVIFEIYNEP TYVSWSVVKD | 180 |
YAEEVISEIR KHSDNLVVVG SPTWSQDVGA AANDRINDEN VAYSLHFYAG THFSSLRDKA | 240 |
DYALSQGVAL FVTEWGSVNA DGNGSINYDS TGDWLAWMDE NEISWANWAI NDKAESSSIF | 300 |
NSDGSVTETG SFLKSIFESA VPGRIWDDAG IDGGTIGDDD VDSGNEGAGN TGSANGEEGG | 360 |
EADNGSGGAI DGENDNVDLV SGSSVGFSKA SDWGAGFNGS FTINNTGSSD IEGWVLEFDF | 420 |
DGQINSFWTA QIVSHSGNHY VVKPHDWNST VNAGKSLDLG FTATGGQTVT NITLGGNSDV | 480 |
GQSTGNTNEG DTVVGATSLA PIVEFSVSKD WGAGFNGEFT IKNTGSTDLS GWTLEFDYDG | 540 |
QIDSFWTAKI ISHSEGHYVV KPLDWNSTIK PGDSLKLGFT ATGSKNVSNS TLK | 593 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.