CAZyme3D

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Entry ID

Information for CAZyme ID: QFS90675.1

Basic Information

GenBank IDQFS90675.1
FamilyGT26
Sequence Length264
UniProt IDQFS90675.1(MOD)Download
Average pLDDT?91.34
CAZy50 ID168023
CAZy50 RepYes, QFS90675.1
Structure ClusterSC_GT26_clus16
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2587868
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium sp. THAF192

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MASEDLRFAE  PLRTVTVGAF  ETAVLTRRGL  ADLMVNDCLS  LRQDPANKRP  KLVFSSNGQG60
IALAGRDPIF  AQAMRQADII  HADGMSVVFA  SRLTSHPLPE  RISTTDFFHD  AAHVAATHKL120
KFFLLGADEE  QNAAATTIAS  EMYPSVEIVG  RHHGYFGVDD  DARICQLIRQ  SGAEVLWVAL180
GKPRQEYWCV  QNRDQLRGVA  WIKTCGGLYS  FLAGDAPRAP  RWMQATGLEW  LYRTLDDPKR240
LAWRYITTNP  YAFYRLLKYT  EHRR264

Predicted 3D structure by AlphaFold2 with pLDDT = 91.34 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MASEDLRFAE  PLRTVTVGAF  ETAVLTRRGL  ADLMVNDCLS  LRQDPANKRP  KLVFSSNGQG60
IALAGRDPIF  AQAMRQADII  HADGMSVVFA  SRLTSHPLPE  RISTTDFFHD  AAHVAATHKL120
KFFLLGADEE  QNAAATTIAS  EMYPSVEIVG  RHHGYFGVDD  DARICQLIRQ  SGAEVLWVAL180
GKPRQEYWCV  QNRDQLRGVA  WIKTCGGLYS  FLAGDAPRAP  RWMQATGLEW  LYRTLDDPKR240
LAWRYITTNP  YAFYRLLKYT  EHRR264

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT26(74-244)

MASEDLRFAE  PLRTVTVGAF  ETAVLTRRGL  ADLMVNDCLS  LRQDPANKRP  KLVFSSNGQG60
IALAGRDPIF  AQAMRQADII  HADGMSVVFA  SRLTSHPLPE  RISTTDFFHD  AAHVAATHKL120
KFFLLGADEE  QNAAATTIAS  EMYPSVEIVG  RHHGYFGVDD  DARICQLIRQ  SGAEVLWVAL180
GKPRQEYWCV  QNRDQLRGVA  WIKTCGGLYS  FLAGDAPRAP  RWMQATGLEW  LYRTLDDPKR240
LAWRYITTNP  YAFYRLLKYT  EHRR264

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help