CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: QFR39220.1

Basic Information

GenBank IDQFR39220.1
FamilyGT51
Sequence Length1066
UniProt IDA0A5P8NDM4(100,100)Download
Average pLDDT?85.66
CAZy50 ID11617
CAZy50 RepYes, QFR39220.1
Structure ClusterSC_GT51_clus19
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1862133
KingdomBacteria
PhylumCandidatus Gracilibacteria
Class
Order
Family
Genus
SpeciesCandidatus Gracilibacteria bacterium 28_42_T64

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFKKKSLQKR  KLKTTYTKKK  TPAKKKKTAG  SILKFITYTV  IFFVTISFIL  GLVLYKKYIV60
NLPSISELEN  LEIAESSTIY  DKNGIELYKI  FKEKRTYIPF  DEINSNMINA  LVAGEDKRYW120
DNPGFDVIGL  IRAVINKVIG  KNVKVEGTST  ITQQLIRNTI  IKNEKTIERK  IKEIYLAYKL180
TNGVSKEKII  ELYLNKISFG  SNAFGIEQAS  QTFFAKKAKE  LNIYESSILA  SLPKGPTFYS240
PYNHPDRIVG  YPYIFTEDDT  DNIIQILSSK  DALIHQEMLQ  NFISFINNIK  ATKLSGTDKI300
LLCGLNNEYF  KNNLLIDNDG  CSVMAHSKLL  NFLNAIQIKV  DSNFIEYQTG  RKDFILGRML360
EDEYIDFSQY  KEAIIEGIGY  KFNIYSENIK  APHFVFYVKE  YLENLYGKDV  VSMGGLKIFT420
TLDYELQEKA  EEIVKKHAEL  NEKRYDASSA  ALVSLDNKTG  DIITMVGGKD  YFDADNKGNV480
NIITSKLQPG  STFKPFVYSI  GMYKEEIGSK  TPIYDVETQF  PGYKPSNFDG  KFMGKMNLST540
ALNNSRNIPA  IKMFYMAGGE  RSIVSFMKTL  GVDSLKNHGN  YGAPLALGTG  EMTPLELASA600
YSVFANMGIK  KEINPILKIV  DSKGNIVTER  KEAQGEEVIS  SSQSYIMNNM  LSDTSTRPEF660
WNNYLSLRGR  KVAAKTGTST  KQYTKYGRKT  ISPRNLWTIG  YTPQYTTVVW  AGNPDGTELN720
FKGNGLEGAG  VIWKEFMELA  HKGKKVENWR  RPAGVKEISI  SEISGLLPSL  ENSSSSFTTK780
SLFLNTPTEY  DNSFRSIQVD  ALCNGLVTDA  TPVAALKNVT  LAQFHSLSPS  NASWENPVQD840
WVNSDKAREL  YGNIPNLITS  ISDQTCKREE  RESSIIIKST  TNNGDGFVAG  ENFIELAYKS900
NHPIIKIDIL  IGGSLVDEIK  LRNKKTGTYS  GKFHIPSSFV  DKKTTLTIRA  VDNQFYSNTE960
EKNIVILKKD  IEAPNIKITN  PSDLKIKLYN  DSFFNLRGKV  TDKTSIRTIN  IYIDGVVEKI1020
GITDRNFVYP  ITGSKLSIGT  HIIKIDAIDN  YFNKGTKEIQ  LEVLEK1066

Predicted 3D structure by AlphaFold2 with pLDDT = 85.66 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFKKKSLQKR  KLKTTYTKKK  TPAKKKKTAG  SILKFITYTV  IFFVTISFIL  GLVLYKKYIV60
NLPSISELEN  LEIAESSTIY  DKNGIELYKI  FKEKRTYIPF  DEINSNMINA  LVAGEDKRYW120
DNPGFDVIGL  IRAVINKVIG  KNVKVEGTST  ITQQLIRNTI  IKNEKTIERK  IKEIYLAYKL180
TNGVSKEKII  ELYLNKISFG  SNAFGIEQAS  QTFFAKKAKE  LNIYESSILA  SLPKGPTFYS240
PYNHPDRIVG  YPYIFTEDDT  DNIIQILSSK  DALIHQEMLQ  NFISFINNIK  ATKLSGTDKI300
LLCGLNNEYF  KNNLLIDNDG  CSVMAHSKLL  NFLNAIQIKV  DSNFIEYQTG  RKDFILGRML360
EDEYIDFSQY  KEAIIEGIGY  KFNIYSENIK  APHFVFYVKE  YLENLYGKDV  VSMGGLKIFT420
TLDYELQEKA  EEIVKKHAEL  NEKRYDASSA  ALVSLDNKTG  DIITMVGGKD  YFDADNKGNV480
NIITSKLQPG  STFKPFVYSI  GMYKEEIGSK  TPIYDVETQF  PGYKPSNFDG  KFMGKMNLST540
ALNNSRNIPA  IKMFYMAGGE  RSIVSFMKTL  GVDSLKNHGN  YGAPLALGTG  EMTPLELASA600
YSVFANMGIK  KEINPILKIV  DSKGNIVTER  KEAQGEEVIS  SSQSYIMNNM  LSDTSTRPEF660
WNNYLSLRGR  KVAAKTGTST  KQYTKYGRKT  ISPRNLWTIG  YTPQYTTVVW  AGNPDGTELN720
FKGNGLEGAG  VIWKEFMELA  HKGKKVENWR  RPAGVKEISI  SEISGLLPSL  ENSSSSFTTK780
SLFLNTPTEY  DNSFRSIQVD  ALCNGLVTDA  TPVAALKNVT  LAQFHSLSPS  NASWENPVQD840
WVNSDKAREL  YGNIPNLITS  ISDQTCKREE  RESSIIIKST  TNNGDGFVAG  ENFIELAYKS900
NHPIIKIDIL  IGGSLVDEIK  LRNKKTGTYS  GKFHIPSSFV  DKKTTLTIRA  VDNQFYSNTE960
EKNIVILKKD  IEAPNIKITN  PSDLKIKLYN  DSFFNLRGKV  TDKTSIRTIN  IYIDGVVEKI1020
GITDRNFVYP  ITGSKLSIGT  HIIKIDAIDN  YFNKGTKEIQ  LEVLEK1066

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(86-247)

MFKKKSLQKR  KLKTTYTKKK  TPAKKKKTAG  SILKFITYTV  IFFVTISFIL  GLVLYKKYIV60
NLPSISELEN  LEIAESSTIY  DKNGIELYKI  FKEKRTYIPF  DEINSNMINA  LVAGEDKRYW120
DNPGFDVIGL  IRAVINKVIG  KNVKVEGTST  ITQQLIRNTI  IKNEKTIERK  IKEIYLAYKL180
TNGVSKEKII  ELYLNKISFG  SNAFGIEQAS  QTFFAKKAKE  LNIYESSILA  SLPKGPTFYS240
PYNHPDRIVG  YPYIFTEDDT  DNIIQILSSK  DALIHQEMLQ  NFISFINNIK  ATKLSGTDKI300
LLCGLNNEYF  KNNLLIDNDG  CSVMAHSKLL  NFLNAIQIKV  DSNFIEYQTG  RKDFILGRML360
EDEYIDFSQY  KEAIIEGIGY  KFNIYSENIK  APHFVFYVKE  YLENLYGKDV  VSMGGLKIFT420
TLDYELQEKA  EEIVKKHAEL  NEKRYDASSA  ALVSLDNKTG  DIITMVGGKD  YFDADNKGNV480
NIITSKLQPG  STFKPFVYSI  GMYKEEIGSK  TPIYDVETQF  PGYKPSNFDG  KFMGKMNLST540
ALNNSRNIPA  IKMFYMAGGE  RSIVSFMKTL  GVDSLKNHGN  YGAPLALGTG  EMTPLELASA600
YSVFANMGIK  KEINPILKIV  DSKGNIVTER  KEAQGEEVIS  SSQSYIMNNM  LSDTSTRPEF660
WNNYLSLRGR  KVAAKTGTST  KQYTKYGRKT  ISPRNLWTIG  YTPQYTTVVW  AGNPDGTELN720
FKGNGLEGAG  VIWKEFMELA  HKGKKVENWR  RPAGVKEISI  SEISGLLPSL  ENSSSSFTTK780
SLFLNTPTEY  DNSFRSIQVD  ALCNGLVTDA  TPVAALKNVT  LAQFHSLSPS  NASWENPVQD840
WVNSDKAREL  YGNIPNLITS  ISDQTCKREE  RESSIIIKST  TNNGDGFVAG  ENFIELAYKS900
NHPIIKIDIL  IGGSLVDEIK  LRNKKTGTYS  GKFHIPSSFV  DKKTTLTIRA  VDNQFYSNTE960
EKNIVILKKD  IEAPNIKITN  PSDLKIKLYN  DSFFNLRGKV  TDKTSIRTIN  IYIDGVVEKI1020
GITDRNFVYP  ITGSKLSIGT  HIIKIDAIDN  YFNKGTKEIQ  LEVLEK1066

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help