CAZyme3D

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Entry ID

Information for CAZyme ID: QFR39021.1

Basic Information

GenBank IDQFR39021.1
FamilyGT2
Sequence Length343
UniProt IDA0A5P8NDC0(100,100)Download
Average pLDDT?82.89
CAZy50 ID135365
CAZy50 RepYes, QFR39021.1
Structure ClusterSC_GT2_clus1148
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1862133
KingdomBacteria
PhylumCandidatus Gracilibacteria
Class
Order
Family
Genus
SpeciesCandidatus Gracilibacteria bacterium 28_42_T64

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNLLQVFFII  SGLIIFFLAL  DIARKQKFNA  LHFIVFILIG  LGLLVFTVFP  GSLNGIGRFF60
GLQRGADLLV  YSSIVFLIYF  TLLLLRKVEG  NNEDLTKLIR  EIAVKGGTRE  KIHGKEIFLI120
RSFNEATVIS  STIQSIFDAG  YKNILVINDG  STDNTNTVIK  RDFGDKVILL  EHYKNRGAGA180
ALETGFEYVR  RYGKVDYVIC  FDADGQHNVG  DVKTFESYLK  EHKKVDILLG  SRFLKKKQVG240
MPFARKVILK  LGILFTAVLS  SIKLTDAHNG  FRVIKTDVLD  DIHITIDGMG  YASELIDIIT300
QKKLVYKEVP  VNVKYTKYSL  SKGQKNSNAI  NIAFKFMWSK  FFK343

Predicted 3D structure by AlphaFold2 with pLDDT = 82.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNLLQVFFII  SGLIIFFLAL  DIARKQKFNA  LHFIVFILIG  LGLLVFTVFP  GSLNGIGRFF60
GLQRGADLLV  YSSIVFLIYF  TLLLLRKVEG  NNEDLTKLIR  EIAVKGGTRE  KIHGKEIFLI120
RSFNEATVIS  STIQSIFDAG  YKNILVINDG  STDNTNTVIK  RDFGDKVILL  EHYKNRGAGA180
ALETGFEYVR  RYGKVDYVIC  FDADGQHNVG  DVKTFESYLK  EHKKVDILLG  SRFLKKKQVG240
MPFARKVILK  LGILFTAVLS  SIKLTDAHNG  FRVIKTDVLD  DIHITIDGMG  YASELIDIIT300
QKKLVYKEVP  VNVKYTKYSL  SKGQKNSNAI  NIAFKFMWSK  FFK343

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(120-281)

MNLLQVFFII  SGLIIFFLAL  DIARKQKFNA  LHFIVFILIG  LGLLVFTVFP  GSLNGIGRFF60
GLQRGADLLV  YSSIVFLIYF  TLLLLRKVEG  NNEDLTKLIR  EIAVKGGTRE  KIHGKEIFLI120
RSFNEATVIS  STIQSIFDAG  YKNILVINDG  STDNTNTVIK  RDFGDKVILL  EHYKNRGAGA180
ALETGFEYVR  RYGKVDYVIC  FDADGQHNVG  DVKTFESYLK  EHKKVDILLG  SRFLKKKQVG240
MPFARKVILK  LGILFTAVLS  SIKLTDAHNG  FRVIKTDVLD  DIHITIDGMG  YASELIDIIT300
QKKLVYKEVP  VNVKYTKYSL  SKGQKNSNAI  NIAFKFMWSK  FFK343

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help