Information for CAZyme ID: QEO28275.1
Basic Information
| GenBank ID | QEO28275.1 |
| Family | CBM13 |
| Sequence Length | 736 |
| UniProt ID | A0A5C1ZJ04(100,100) |
| Average pLDDT? | 75.02 |
| CAZy50 ID | 28309 |
| CAZy50 Rep | No, UKE70394.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 487909 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Xanthomonadales |
| Family | Xanthomonadaceae |
| Genus | Xanthomonas |
| Species | Xanthomonas translucens |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MYNRGIILAS CVAVAAGVWL GSCVSKSGAS HAASNAGQAA AQGQAPVKTA LARSAANGAS | 60 |
| PQLAPGASPY FDAPDNGTLV TYAGHATPTK EGPFELFPAR ISERYALRAT MEGKMTIVAP | 120 |
| DGTRLQMDYV RHTEGKNGNW TWVGRLPGAL VGEESVITFG KNAVFGSLGA SGGKVYRIST | 180 |
| VEGQPYVMAA SEVEVRSAAP SRRGDAREML PSANAAPRAA ATGIIPNYSN LGKVNAAAGT | 240 |
| TSTNTIDVVL GYTPDYKAYR GGESATETVL TNLVEVANQA FANANVQARY RLVGIIEVGY | 300 |
| TNNNDNSQAL DELTWIQAYN DAFRPIRQVR ENYGADLVAL VRRLNSASQN SCGVAWVNGS | 360 |
| TDSRYAYAIV SDGVDGNYSC YSTTLGHELG HLLGSHHQRE TGQETGYNYG HRSDVGSFHT | 420 |
| VMAYAVNGQR EVNIYSTPAI QGCYGQACGV FAEADNASAF MLTVPRVVQY RATVVPFEDS | 480 |
| SSPGQIVGPS GKCLDVVDGR TDNTARIQVW GCNGLRQQKW QWQSKSRALR NNGTDRVLDI | 540 |
| AGAKSSNGAG VQLYQGLNAS NQRWNFRSSS IIATGGKVLD VVNGGSGNGA RLQTWDNLGG | 600 |
| SNQTWQFDPA TGAIQVSSGR CLDVMGGGVT NGTAVQLWDC SGNKYQKWSL GTNGSIVGYG | 660 |
| GNCLEARGAS GANGNTILMA TCNGSAAQVW RIRGQIRSDL NNKCLDDSEG GRSNGARVQM | 720 |
| WDCLGNPNQT WELQPN | 736 |
Predicted 3D structure by AlphaFold2 with pLDDT = 75.02 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM13(528-650)+CBM13(615-733)
| MYNRGIILAS CVAVAAGVWL GSCVSKSGAS HAASNAGQAA AQGQAPVKTA LARSAANGAS | 60 |
| PQLAPGASPY FDAPDNGTLV TYAGHATPTK EGPFELFPAR ISERYALRAT MEGKMTIVAP | 120 |
| DGTRLQMDYV RHTEGKNGNW TWVGRLPGAL VGEESVITFG KNAVFGSLGA SGGKVYRIST | 180 |
| VEGQPYVMAA SEVEVRSAAP SRRGDAREML PSANAAPRAA ATGIIPNYSN LGKVNAAAGT | 240 |
| TSTNTIDVVL GYTPDYKAYR GGESATETVL TNLVEVANQA FANANVQARY RLVGIIEVGY | 300 |
| TNNNDNSQAL DELTWIQAYN DAFRPIRQVR ENYGADLVAL VRRLNSASQN SCGVAWVNGS | 360 |
| TDSRYAYAIV SDGVDGNYSC YSTTLGHELG HLLGSHHQRE TGQETGYNYG HRSDVGSFHT | 420 |
| VMAYAVNGQR EVNIYSTPAI QGCYGQACGV FAEADNASAF MLTVPRVVQY RATVVPFEDS | 480 |
| SSPGQIVGPS GKCLDVVDGR TDNTARIQVW GCNGLRQQKW QWQSKSRALR NNGTDRVLDI | 540 |
| AGAKSSNGAG VQLYQGLNAS NQRWNFRSSS IIATGGKVLD VVNGGSGNGA RLQTWDNLGG | 600 |
| SNQTWQFDPA TGAIQVSSGR CLDVMGGGVT NGTAVQLWDC SGNKYQKWSL GTNGSIVGYG | 660 |
| GNCLEARGAS GANGNTILMA TCNGSAAQVW RIRGQIRSDL NNKCLDDSEG GRSNGARVQM | 720 |
| WDCLGNPNQT WELQPN | 736 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.